Variant report

Variant	rs12152798
Chromosome Location	chr5:113306464-113306465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1487227	0.82[JPT][hapmap]
rs167197	1.00[ASN][1000 genomes]
rs186121	1.00[ASN][1000 genomes]
rs296475	1.00[ASN][1000 genomes]
rs296484	1.00[ASN][1000 genomes]
rs296485	1.00[ASN][1000 genomes]
rs296486	1.00[ASN][1000 genomes]
rs296487	1.00[ASN][1000 genomes]
rs296488	1.00[ASN][1000 genomes]
rs296490	1.00[ASN][1000 genomes]
rs296491	0.94[ASN][1000 genomes]
rs296499	1.00[ASN][1000 genomes]
rs296501	1.00[ASN][1000 genomes]
rs35703340	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368170	1.00[ASN][1000 genomes]
rs381068	1.00[ASN][1000 genomes]
rs395885	1.00[ASN][1000 genomes]
rs579657	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv980714	chr5:113301277-113321673	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113304600-113307000	Enhancers	Brain Germinal Matrix	brain
2	chr5:113305600-113307400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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