Variant report
| Variant | rs395885 |
|---|---|
| Chromosome Location | chr5:113312058-113312059 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:113305896..113307463-chr5:113310563..113313169,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1021275 | 0.82[EUR][1000 genomes] |
| rs12152798 | 1.00[ASN][1000 genomes] |
| rs12153082 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1487225 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1487227 | 0.82[JPT][hapmap] |
| rs167197 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs186121 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296475 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296478 | 0.87[EUR][1000 genomes] |
| rs296484 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296485 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296486 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296487 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296490 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296491 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs296498 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs296499 | 1.00[ASN][1000 genomes] |
| rs296501 | 1.00[ASN][1000 genomes] |
| rs35703340 | 1.00[ASN][1000 genomes] |
| rs368170 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs381068 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4331887 | 0.81[EUR][1000 genomes] |
| rs579657 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471042 | chr5:113160490-113440892 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv980714 | chr5:113301277-113321673 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113310600-113312400 | Enhancers | Fetal Heart | heart |
| 2 | chr5:113312000-113312200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
