Variant report
| Variant | rs296487 |
|---|---|
| Chromosome Location | chr5:113307807-113307808 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1021275 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12152798 | 1.00[ASN][1000 genomes] |
| rs167197 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs186121 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296475 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296484 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296485 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296486 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296488 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296490 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296491 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs296498 | 0.81[EUR][1000 genomes] |
| rs296499 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296500 | 0.84[EUR][1000 genomes] |
| rs296501 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35703340 | 1.00[ASN][1000 genomes] |
| rs368170 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs381068 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs395885 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4331887 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs579657 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471042 | chr5:113160490-113440892 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv980714 | chr5:113301277-113321673 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113307400-113310600 | Weak transcription | Fetal Heart | heart |
