Variant report

Variant	rs296500
Chromosome Location	chr5:113335718-113335719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1021275	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153082	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487225	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167197	0.84[EUR][1000 genomes]
rs296475	0.86[EUR][1000 genomes]
rs296484	0.84[EUR][1000 genomes]
rs296487	0.84[EUR][1000 genomes]
rs296490	0.90[EUR][1000 genomes]
rs296491	0.90[EUR][1000 genomes]
rs296498	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296499	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs296501	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs368170	0.87[EUR][1000 genomes]
rs381068	0.80[EUR][1000 genomes]
rs4331887	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599418	chr5:113327561-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
3	nsv599419	chr5:113327561-113339698	Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv599423	chr5:113330738-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv599427	chr5:113330990-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv599428	chr5:113331136-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv599429	chr5:113331281-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv599430	chr5:113331546-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv599431	chr5:113331616-113336598	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113335200-113336200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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