Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1021275	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153082	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487225	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167197	0.81[EUR][1000 genomes]
rs186121	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296475	0.82[EUR][1000 genomes]
rs296478	0.81[EUR][1000 genomes]
rs296484	0.81[EUR][1000 genomes]
rs296485	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296486	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296487	0.81[EUR][1000 genomes]
rs296488	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296490	0.85[EUR][1000 genomes]
rs296491	0.85[EUR][1000 genomes]
rs296499	0.84[EUR][1000 genomes]
rs296500	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296501	0.85[EUR][1000 genomes]
rs368170	0.83[EUR][1000 genomes]
rs381068	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs395885	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4331887	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579657	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599419	chr5:113327561-113339698	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs296498	OR4X2	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113336800-113337200	Enhancers	Skeletal Muscle Male	skeletal muscle

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