Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113305896..113307463-chr5:113310563..113313169,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1021275	0.81[EUR][1000 genomes]
rs12152798	1.00[ASN][1000 genomes]
rs12153082	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1487225	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs167197	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296475	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296478	0.86[EUR][1000 genomes]
rs296484	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296485	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296486	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296487	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296490	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296491	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296498	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296499	1.00[ASN][1000 genomes]
rs296501	1.00[ASN][1000 genomes]
rs35703340	1.00[ASN][1000 genomes]
rs368170	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs395885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579657	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv980714	chr5:113301277-113321673	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113304600-113307000	Enhancers	Brain Germinal Matrix	brain
2	chr5:113305600-113307400	Enhancers	Fetal Heart	heart

Quick Search: