Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1021275	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12152798	0.94[ASN][1000 genomes]
rs12153082	0.82[EUR][1000 genomes]
rs1487225	0.83[EUR][1000 genomes]
rs1487227	0.82[JPT][hapmap]
rs167197	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186121	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296475	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296484	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296485	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296486	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296487	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296488	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296490	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296498	0.85[EUR][1000 genomes]
rs296499	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs296500	0.90[EUR][1000 genomes]
rs296501	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35703340	0.94[ASN][1000 genomes]
rs368170	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs381068	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs395885	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4331887	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs579657	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2762537	chr5:113324270-113335389	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv2763922	chr5:113324270-113335389	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113325400-113325800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:113325400-113325800	Active TSS	A549	lung

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