Variant report

Variant	rs4331887
Chromosome Location	chr5:113344778-113344779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1021275	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153082	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487225	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167197	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs296475	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs296484	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs296487	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs296490	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs296491	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs296498	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296499	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs296500	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296501	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs368170	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs381068	0.82[EUR][1000 genomes]
rs395885	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113342200-113348000	Weak transcription	Ovary	ovary
2	chr5:113344400-113344800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:113344600-113345200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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