Variant report

Variant	rs12153082
Chromosome Location	chr5:113374996-113374997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1021275	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487225	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186121	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs296485	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs296486	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs296488	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs296490	0.82[EUR][1000 genomes]
rs296491	0.82[EUR][1000 genomes]
rs296498	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296499	0.81[EUR][1000 genomes]
rs296500	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296501	0.83[EUR][1000 genomes]
rs368170	0.80[EUR][1000 genomes]
rs381068	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs395885	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4331887	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579657	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113374400-113375000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:113374400-113375000	Active TSS	Gastric	stomach
3	chr5:113374400-113375200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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