Variant report

Variant	rs12208241
Chromosome Location	chr6:100933472-100933473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100933157..100934125-chr6:101104912..101105845,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457800	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155472	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155477	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212939	0.89[EUR][1000 genomes]
rs12664707	0.88[EUR][1000 genomes]
rs13201976	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894561	0.87[EUR][1000 genomes]
rs2007134	0.85[EUR][1000 genomes]
rs2071826	0.87[EUR][1000 genomes]
rs2157342	0.89[EUR][1000 genomes]
rs2213594	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213595	0.87[EUR][1000 genomes]
rs2397974	0.85[EUR][1000 genomes]
rs241819	0.85[EUR][1000 genomes]
rs4839780	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4840132	0.86[EUR][1000 genomes]
rs4840133	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4840134	0.84[EUR][1000 genomes]
rs6901854	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6903206	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910391	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6929748	0.87[EUR][1000 genomes]
rs6939998	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748269	0.87[EUR][1000 genomes]
rs7751185	0.86[EUR][1000 genomes]
rs7751526	0.86[EUR][1000 genomes]
rs7773043	0.89[EUR][1000 genomes]
rs7773661	0.88[EUR][1000 genomes]
rs9322076	0.84[EUR][1000 genomes]
rs9373504	0.87[EUR][1000 genomes]
rs9386154	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100931800-100933800	Enhancers	GM12878-XiMat	blood
2	chr6:100932800-100936000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:100933200-100935800	Enhancers	Liver	Liver
4	chr6:100933200-100936000	Weak transcription	HSMMtube	muscle
5	chr6:100933200-100936200	Weak transcription	HSMM	muscle
6	chr6:100933400-100934000	Enhancers	Fetal Muscle Leg	muscle

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