Variant report

Variant	rs241819
Chromosome Location	chr6:100910798-100910799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10457800	0.85[EUR][1000 genomes]
rs11155472	0.86[EUR][1000 genomes]
rs11155477	0.85[EUR][1000 genomes]
rs12208241	0.85[EUR][1000 genomes]
rs12212939	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12664707	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13201976	0.85[EUR][1000 genomes]
rs1894561	0.91[EUR][1000 genomes]
rs2007134	0.93[EUR][1000 genomes]
rs2071826	0.91[EUR][1000 genomes]
rs2157342	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2213594	0.85[EUR][1000 genomes]
rs2213595	0.91[EUR][1000 genomes]
rs2397974	0.93[EUR][1000 genomes]
rs241816	0.81[GIH][hapmap]
rs4839780	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs4840132	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4840133	0.88[EUR][1000 genomes]
rs4840134	0.88[EUR][1000 genomes]
rs6901854	0.93[EUR][1000 genomes]
rs6903206	0.85[EUR][1000 genomes]
rs6910391	0.86[EUR][1000 genomes]
rs6929748	0.91[EUR][1000 genomes]
rs6939998	0.85[EUR][1000 genomes]
rs7748269	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7751185	0.90[EUR][1000 genomes]
rs7751526	0.90[EUR][1000 genomes]
rs7773043	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7773661	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322076	0.89[EUR][1000 genomes]
rs9373504	0.91[EUR][1000 genomes]
rs9386154	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv515895	chr6:100868779-100910798	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv533053	chr6:100883636-100911512	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100902000-100913600	Active TSS	Psoas Muscle	Psoas
2	chr6:100906600-100914200	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr6:100906800-100914400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:100906800-100914600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:100907400-100913600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:100908000-100913600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:100908000-100913800	Bivalent/Poised TSS	NHDF-Ad	bronchial
8	chr6:100908000-100914800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:100908200-100911000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:100908400-100911200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
11	chr6:100908400-100913800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:100908600-100913400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:100908600-100913400	Active TSS	HSMM	muscle
14	chr6:100908600-100913600	Active TSS	HSMMtube	muscle
15	chr6:100908800-100911800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
16	chr6:100908800-100914000	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:100909600-100911000	Active TSS	Fetal Muscle Trunk	muscle
18	chr6:100909600-100911000	Weak transcription	Pancreas	Pancrea
19	chr6:100909600-100911200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr6:100909600-100911400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr6:100909600-100911800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr6:100910000-100911200	Enhancers	Dnd41	blood
23	chr6:100910000-100911600	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:100910600-100911000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr6:100910600-100911200	Bivalent Enhancer	Liver	Liver

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