Variant report

Variant	rs2157342
Chromosome Location	chr6:100920655-100920656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457800	0.89[EUR][1000 genomes]
rs11155472	0.90[EUR][1000 genomes]
rs11155477	0.89[EUR][1000 genomes]
rs12208241	0.89[EUR][1000 genomes]
rs12212939	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12664707	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13201976	0.89[EUR][1000 genomes]
rs1894561	0.95[EUR][1000 genomes]
rs2007134	0.96[EUR][1000 genomes]
rs2071826	0.95[EUR][1000 genomes]
rs2213594	0.89[EUR][1000 genomes]
rs2213595	0.95[EUR][1000 genomes]
rs2397974	0.96[EUR][1000 genomes]
rs241819	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4839780	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs4840132	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4840133	0.88[EUR][1000 genomes]
rs4840134	0.92[EUR][1000 genomes]
rs6901854	0.97[EUR][1000 genomes]
rs6903206	0.89[EUR][1000 genomes]
rs6910391	0.90[EUR][1000 genomes]
rs6929748	0.95[EUR][1000 genomes]
rs6939998	0.89[EUR][1000 genomes]
rs7748269	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7751185	0.94[EUR][1000 genomes]
rs7751526	0.94[EUR][1000 genomes]
rs7773043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7773661	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322076	0.92[EUR][1000 genomes]
rs9373504	0.95[EUR][1000 genomes]
rs9386154	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100917400-100929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:100918200-100924000	Enhancers	Dnd41	blood
3	chr6:100920000-100921800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:100920200-100921200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:100920200-100921200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:100920200-100921200	Enhancers	HSMM	muscle
7	chr6:100920400-100921600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:100920400-100921800	Enhancers	GM12878-XiMat	blood
9	chr6:100920600-100920800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr6:100920600-100920800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:100920600-100921000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr6:100920600-100921000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:100920600-100921400	Enhancers	HMEC	breast
14	chr6:100920600-100921800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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