Variant report

Variant	rs9373504
Chromosome Location	chr6:100941037-100941038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100939724..100941535-chr6:101006405..101008824,2	MCF-7	breast:
2	chr6:100940983..100941708-chr6:100956888..100957470,2	MCF-7	breast:
3	chr6:100930706..100932769-chr6:100940646..100942304,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457800	0.87[EUR][1000 genomes]
rs11155472	0.85[EUR][1000 genomes]
rs11155477	0.87[EUR][1000 genomes]
rs12208241	0.87[EUR][1000 genomes]
rs12212939	0.95[EUR][1000 genomes]
rs12664707	0.94[EUR][1000 genomes]
rs13201976	0.87[EUR][1000 genomes]
rs1894561	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007134	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071826	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157342	0.95[EUR][1000 genomes]
rs2213594	0.87[EUR][1000 genomes]
rs2213595	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241819	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4839780	0.82[EUR][1000 genomes]
rs4840132	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4840133	0.83[EUR][1000 genomes]
rs4840134	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901854	0.95[EUR][1000 genomes]
rs6903206	0.87[EUR][1000 genomes]
rs6910391	0.85[EUR][1000 genomes]
rs6929748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939998	0.87[EUR][1000 genomes]
rs7748269	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751185	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751526	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773043	0.95[EUR][1000 genomes]
rs7773661	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9322076	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386154	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100937200-100941200	Weak transcription	Liver	Liver
2	chr6:100940000-100941600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:100940000-100941600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:100940000-100941600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:100940200-100941400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:100940200-100941400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:100940200-100941600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:100940600-100942400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:100940600-100942400	Enhancers	HMEC	breast
10	chr6:100940800-100941600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:100940800-100941600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:100941000-100941200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:100941000-100941200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:100941000-100941400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:100941000-100941400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:100941000-100941600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:100941000-100941600	Enhancers	NHEK	skin

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