Variant report

Variant	rs12214822
Chromosome Location	chr6:24303625-24303626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456301	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192506	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196797	0.89[EUR][1000 genomes]
rs12196880	0.89[EUR][1000 genomes]
rs12198320	0.89[EUR][1000 genomes]
rs12205956	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889058	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889069	0.85[EUR][1000 genomes]
rs73726645	0.93[EUR][1000 genomes]
rs73726651	0.85[EUR][1000 genomes]
rs73726652	0.85[EUR][1000 genomes]
rs7763196	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
3	chr6:24298000-24303800	Strong transcription	HepG2	liver
4	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:24302000-24304000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:24302400-24307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:24302600-24307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:24302600-24308000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:24303200-24306200	Weak transcription	A549	lung
11	chr6:24303200-24308000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:24303600-24303800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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