Variant report

Variant	rs12196797
Chromosome Location	chr6:24313576-24313577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24312848..24315658-chr6:24411529..24413193,2	K562	blood:
2	chr6:24312577..24316019-chr6:24320665..24323632,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10456301	0.89[EUR][1000 genomes]
rs12192506	0.82[EUR][1000 genomes]
rs12196880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205956	0.80[EUR][1000 genomes]
rs12214822	0.89[EUR][1000 genomes]
rs1340699	0.82[EUR][1000 genomes]
rs16889058	0.90[EUR][1000 genomes]
rs16889069	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57500180	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73726645	0.95[EUR][1000 genomes]
rs73726651	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73726652	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467076	0.82[CEU][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24308400-24313600	Weak transcription	Fetal Kidney	kidney
2	chr6:24308400-24313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24312000-24313800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:24312200-24313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:24312200-24314000	Weak transcription	HSMMtube	muscle
6	chr6:24312400-24313800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:24312600-24313800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24312600-24313800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:24312600-24314000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:24312800-24313600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:24312800-24313800	Enhancers	HepG2	liver
12	chr6:24312800-24314200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:24312800-24314200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:24312800-24314400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:24312800-24314400	Enhancers	NH-A	brain
16	chr6:24313000-24313600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:24313000-24313800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:24313000-24314000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:24313000-24314400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:24313400-24313600	Flanking Active TSS	A549	lung
21	chr6:24313400-24313800	Weak transcription	HSMM	muscle
22	chr6:24313400-24314000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:24313400-24314200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:24313400-24314200	Enhancers	Fetal Heart	heart
25	chr6:24313400-24314400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:24313400-24314400	Enhancers	NHEK	skin

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