Variant report

Variant	rs16889058
Chromosome Location	chr6:24311494-24311495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10456301	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192506	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196797	0.90[EUR][1000 genomes]
rs12196880	0.90[EUR][1000 genomes]
rs12198320	0.90[EUR][1000 genomes]
rs12205956	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214822	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340699	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889069	0.87[EUR][1000 genomes]
rs3846828	0.82[CEU][hapmap]
rs73726645	0.95[EUR][1000 genomes]
rs73726651	0.87[EUR][1000 genomes]
rs73726652	0.87[EUR][1000 genomes]
rs7763196	0.90[EUR][1000 genomes]
rs9467076	0.86[CEU][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24308400-24313600	Weak transcription	Fetal Kidney	kidney
3	chr6:24308400-24313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:24308600-24311800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:24309800-24312800	Enhancers	A549	lung
6	chr6:24310800-24312000	Enhancers	HepG2	liver
7	chr6:24311000-24312200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr6:24311400-24311800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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