Variant report

Variant	rs12245747
Chromosome Location	chr10:23445347-23445348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11013215	1.00[EUR][1000 genomes]
rs12098728	1.00[EUR][1000 genomes]
rs1343071	1.00[EUR][1000 genomes]
rs16922847	1.00[EUR][1000 genomes]
rs16922868	1.00[EUR][1000 genomes]
rs16922870	1.00[EUR][1000 genomes]
rs16922884	1.00[EUR][1000 genomes]
rs16922888	1.00[EUR][1000 genomes]
rs16922890	1.00[EUR][1000 genomes]
rs16922900	1.00[EUR][1000 genomes]
rs16922948	1.00[EUR][1000 genomes]
rs16922977	1.00[EUR][1000 genomes]
rs16922981	1.00[EUR][1000 genomes]
rs1886941	1.00[EUR][1000 genomes]
rs1886942	1.00[EUR][1000 genomes]
rs1886943	1.00[EUR][1000 genomes]
rs3888946	1.00[EUR][1000 genomes]
rs58925660	1.00[EUR][1000 genomes]
rs7076684	1.00[EUR][1000 genomes]
rs7080907	1.00[EUR][1000 genomes]
rs7096223	1.00[EUR][1000 genomes]
rs74121720	1.00[EUR][1000 genomes]
rs74121744	1.00[EUR][1000 genomes]
rs753669	1.00[EUR][1000 genomes]
rs7907979	1.00[EUR][1000 genomes]
rs7910703	1.00[EUR][1000 genomes]
rs7910975	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23440400-23446400	Weak transcription	Pancreas	Pancrea
2	chr10:23444600-23446400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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