Variant report

Variant	rs3888946
Chromosome Location	chr10:23350185-23350186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23348229..23350251-chr10:23381679..23384445,2	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

rs_ID	r²[population]
rs11013215	1.00[EUR][1000 genomes]
rs12098728	1.00[EUR][1000 genomes]
rs12245747	1.00[EUR][1000 genomes]
rs1343071	1.00[EUR][1000 genomes]
rs16922847	1.00[EUR][1000 genomes]
rs16922868	1.00[EUR][1000 genomes]
rs16922870	1.00[EUR][1000 genomes]
rs16922884	1.00[EUR][1000 genomes]
rs16922888	1.00[EUR][1000 genomes]
rs16922890	1.00[EUR][1000 genomes]
rs16922900	1.00[EUR][1000 genomes]
rs16922948	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16922977	1.00[EUR][1000 genomes]
rs16922981	1.00[EUR][1000 genomes]
rs1886941	1.00[EUR][1000 genomes]
rs1886942	1.00[EUR][1000 genomes]
rs1886943	1.00[EUR][1000 genomes]
rs3887849	1.00[YRI][hapmap]
rs58925660	1.00[EUR][1000 genomes]
rs7076684	1.00[EUR][1000 genomes]
rs7080907	1.00[EUR][1000 genomes]
rs7092241	1.00[EUR][1000 genomes]
rs7096223	1.00[EUR][1000 genomes]
rs74121720	1.00[EUR][1000 genomes]
rs74121744	1.00[EUR][1000 genomes]
rs753669	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7907979	1.00[EUR][1000 genomes]
rs7910703	1.00[EUR][1000 genomes]
rs7910975	1.00[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23343200-23354200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23345200-23352000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:23345400-23350200	Weak transcription	Fetal Kidney	kidney
4	chr10:23346600-23350800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:23347000-23350200	Weak transcription	K562	blood
6	chr10:23348600-23350600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:23348600-23350800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:23348600-23350800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:23348600-23354200	Weak transcription	Pancreas	Pancrea
10	chr10:23348800-23350800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:23349000-23350200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:23349000-23350400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:23349000-23351000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:23349200-23350400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:23349200-23350600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:23349800-23350400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:23349800-23350800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:23349800-23352000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:23350000-23350400	Enhancers	Stomach Mucosa	stomach
20	chr10:23350000-23350600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:23350000-23351400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:23350000-23352600	Enhancers	Placenta	Placenta

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