Variant report

Variant	rs1886943
Chromosome Location	chr10:23343230-23343231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:55)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:55 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:23293138..23295321-chr10:23343056..23344878,2	K562	blood:
2	chr10:23343008..23344607-chr10:23370957..23373852,2	K562	blood:
3	chr10:22515899..22517554-chr10:23343051..23344773,2	K562	blood:
4	chr10:22258838..22260755-chr10:23343217..23345858,2	K562	blood:
5	chr10:23341017..23343445-chr10:23382753..23384991,2	K562	blood:
6	chr10:22283124..22285962-chr10:23343209..23346203,2	K562	blood:
7	chr10:22781985..22783738-chr10:23342270..23345158,2	K562	blood:
8	chr10:23303236..23310250-chr10:23341340..23346193,13	K562	blood:
9	chr10:23200977..23203770-chr10:23343014..23345057,3	K562	blood:
10	chr10:22704943..22706985-chr10:23343129..23346102,2	K562	blood:
11	chr10:23276792..23280787-chr10:23340649..23346324,8	K562	blood:
12	chr10:22599841..22602684-chr10:23343184..23344928,2	K562	blood:
13	chr10:22839689..22842283-chr10:23342301..23346033,4	K562	blood:
14	chr10:22844152..22847369-chr10:23341363..23344619,3	K562	blood:
15	chr10:23315685..23318237-chr10:23342799..23344648,2	K562	blood:
16	chr10:22954452..22957017-chr10:23343036..23345890,3	K562	blood:
17	chr10:23342240..23344463-chr10:23363258..23365955,2	K562	blood:
18	chr10:22866106..22869303-chr10:23343034..23346067,3	K562	blood:
19	chr10:23293163..23294906-chr10:23341702..23344445,2	K562	blood:
20	chr10:22492352..22494784-chr10:23342363..23343927,2	K562	blood:
21	chr10:23283334..23286243-chr10:23342860..23344874,2	K562	blood:
22	chr10:21817965..21819754-chr10:23342312..23345868,3	K562	blood:
23	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:
24	chr10:21486632..21488656-chr10:23342603..23344244,2	K562	blood:
25	chr10:22716118..22719238-chr10:23342778..23345832,4	K562	blood:
26	chr10:22954452..22957400-chr10:23343036..23345411,3	K562	blood:
27	chr10:23342800..23345390-chr10:24862811..24864494,2	K562	blood:
28	chr10:22094235..22096912-chr10:23343013..23344752,2	K562	blood:
29	chr10:22544996..22546669-chr10:23341658..23344214,2	K562	blood:
30	chr10:23076401..23079823-chr10:23343221..23346091,3	K562	blood:
31	chr10:22892740..22895922-chr10:23342638..23345686,4	K562	blood:
32	chr10:22904654..22906740-chr10:23342600..23344206,2	K562	blood:
33	chr10:22544744..22546398-chr10:23341973..23344722,2	MCF-7	breast:
34	chr10:21814674..21816422-chr10:23343111..23345056,2	K562	blood:
35	chr10:23286320..23291300-chr10:23340827..23345371,11	K562	blood:
36	chr10:22918306..22922347-chr10:23342805..23345758,6	K562	blood:
37	chr10:22612338..22615061-chr10:23342386..23344383,3	K562	blood:
38	chr10:23301145..23302883-chr10:23341346..23344238,2	K562	blood:
39	chr10:23341115..23345773-chr10:23377859..23381987,5	K562	blood:
40	chr10:22898295..22900458-chr10:23342813..23344415,2	K562	blood:
41	chr10:23302995..23309769-chr10:23341340..23346193,8	K562	blood:
42	chr10:23103158..23106579-chr10:23341900..23344132,3	K562	blood:
43	chr10:23235549..23238851-chr10:23341862..23344743,3	K562	blood:
44	chr10:21814581..21817361-chr10:23341974..23344611,3	K562	blood:
45	chr10:22298312..22301292-chr10:23342361..23345861,3	K562	blood:
46	chr10:23276691..23280787-chr10:23341219..23344727,5	K562	blood:
47	chr10:23104132..23107506-chr10:23342632..23345950,5	K562	blood:
48	chr10:23297640..23300318-chr10:23342742..23344697,2	K562	blood:
49	chr10:23284388..23291311-chr10:23340827..23345972,11	K562	blood:
50	chr10:23261428..23263146-chr10:23343136..23345812,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223131	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000221221	Chromatin interaction
ENSG00000150867	Chromatin interaction
ENSG00000180592	Chromatin interaction
ENSG00000148450	Chromatin interaction

rs_ID	r²[population]
rs11013215	1.00[EUR][1000 genomes]
rs12098728	1.00[EUR][1000 genomes]
rs12245747	1.00[EUR][1000 genomes]
rs1343071	1.00[EUR][1000 genomes]
rs16922847	1.00[EUR][1000 genomes]
rs16922868	1.00[EUR][1000 genomes]
rs16922870	1.00[EUR][1000 genomes]
rs16922884	1.00[EUR][1000 genomes]
rs16922888	1.00[EUR][1000 genomes]
rs16922890	1.00[EUR][1000 genomes]
rs16922900	1.00[EUR][1000 genomes]
rs16922948	1.00[EUR][1000 genomes]
rs16922977	1.00[EUR][1000 genomes]
rs16922981	1.00[EUR][1000 genomes]
rs1886941	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1886942	1.00[EUR][1000 genomes]
rs3888946	1.00[EUR][1000 genomes]
rs58925660	1.00[EUR][1000 genomes]
rs7076684	1.00[EUR][1000 genomes]
rs7080907	1.00[EUR][1000 genomes]
rs7092241	1.00[EUR][1000 genomes]
rs7096223	1.00[EUR][1000 genomes]
rs74121720	1.00[EUR][1000 genomes]
rs74121744	1.00[EUR][1000 genomes]
rs753669	1.00[EUR][1000 genomes]
rs7907979	1.00[EUR][1000 genomes]
rs7910703	1.00[EUR][1000 genomes]
rs7910975	1.00[EUR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23336600-23348800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:23339600-23344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:23340000-23343400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:23340600-23345800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:23341200-23344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:23341800-23345400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:23342200-23344000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:23342200-23348600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:23342400-23343800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:23342400-23344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:23342400-23344000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:23342400-23344200	Weak transcription	Fetal Kidney	kidney
13	chr10:23342400-23344800	Enhancers	K562	blood
14	chr10:23342400-23350000	Weak transcription	Stomach Mucosa	stomach
15	chr10:23342600-23343800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:23342600-23343800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:23342600-23344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:23342600-23344200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:23342800-23343800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:23342800-23344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:23343000-23343400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:23343000-23345400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:23343200-23344000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:23343200-23354200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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