Variant report

Variant	rs12261884
Chromosome Location	chr10:42602719-42602720
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 199 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10159732	0.93[ASN][1000 genomes]
rs10159818	0.90[ASN][1000 genomes]
rs10159957	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10160147	0.93[ASN][1000 genomes]
rs11265995	0.93[ASN][1000 genomes]
rs11265997	0.93[ASN][1000 genomes]
rs11266000	0.90[ASN][1000 genomes]
rs11266015	0.93[ASN][1000 genomes]
rs11266017	0.93[ASN][1000 genomes]
rs11266018	0.93[ASN][1000 genomes]
rs11266026	0.87[AFR][1000 genomes]
rs11499297	0.87[AFR][1000 genomes]
rs11499300	0.93[ASN][1000 genomes]
rs11499303	0.93[ASN][1000 genomes]
rs11499337	0.87[AFR][1000 genomes]
rs11499338	0.93[ASN][1000 genomes]
rs11499340	0.87[AFR][1000 genomes]
rs11499347	0.93[ASN][1000 genomes]
rs11499348	0.93[ASN][1000 genomes]
rs11499349	0.93[ASN][1000 genomes]
rs11499350	0.90[ASN][1000 genomes]
rs11499351	0.90[ASN][1000 genomes]
rs11499353	0.93[ASN][1000 genomes]
rs11499354	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11499358	0.93[ASN][1000 genomes]
rs11499360	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11499362	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11499363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11499461	0.93[ASN][1000 genomes]
rs11499466	0.87[ASN][1000 genomes]
rs12240502	0.90[ASN][1000 genomes]
rs12240553	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12240842	0.93[ASN][1000 genomes]
rs12241541	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12242206	0.93[ASN][1000 genomes]
rs12242224	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12242371	0.87[AFR][1000 genomes]
rs12242787	1.00[AMR][1000 genomes]
rs12242847	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12243934	0.93[ASN][1000 genomes]
rs12244509	0.93[ASN][1000 genomes]
rs12244894	1.00[AMR][1000 genomes]
rs12245723	0.93[ASN][1000 genomes]
rs12245990	0.84[ASN][1000 genomes]
rs12246416	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12246818	0.93[ASN][1000 genomes]
rs12247141	0.89[ASN][1000 genomes]
rs12247142	0.89[ASN][1000 genomes]
rs12247170	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12247467	0.87[ASN][1000 genomes]
rs12248804	0.89[ASN][1000 genomes]
rs12249371	0.93[ASN][1000 genomes]
rs12249687	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12249700	0.93[ASN][1000 genomes]
rs12251294	0.93[ASN][1000 genomes]
rs12251352	0.93[ASN][1000 genomes]
rs12251410	1.00[AMR][1000 genomes]
rs12251878	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12252325	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12253342	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12254089	0.93[ASN][1000 genomes]
rs12254452	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12254654	0.93[ASN][1000 genomes]
rs12255135	0.93[ASN][1000 genomes]
rs12255198	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12255875	1.00[AMR][1000 genomes]
rs12256358	0.93[ASN][1000 genomes]
rs12256967	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12257090	0.90[ASN][1000 genomes]
rs12257927	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12258801	0.86[ASN][1000 genomes]
rs12259134	1.00[AMR][1000 genomes]
rs12259481	0.93[ASN][1000 genomes]
rs12260055	0.93[ASN][1000 genomes]
rs12260322	0.93[ASN][1000 genomes]
rs12260821	0.93[ASN][1000 genomes]
rs12262406	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12262458	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12262732	1.00[AMR][1000 genomes]
rs12262762	1.00[AMR][1000 genomes]
rs12263276	0.93[ASN][1000 genomes]
rs12263924	0.93[ASN][1000 genomes]
rs12264615	0.93[ASN][1000 genomes]
rs12264853	0.93[ASN][1000 genomes]
rs12265638	0.93[ASN][1000 genomes]
rs12266062	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12266354	0.93[ASN][1000 genomes]
rs12266605	0.93[ASN][1000 genomes]
rs12267283	0.93[ASN][1000 genomes]
rs12267285	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12267425	0.93[ASN][1000 genomes]
rs12267505	0.93[ASN][1000 genomes]
rs12268001	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12268109	0.87[AFR][1000 genomes]
rs12268240	0.87[ASN][1000 genomes]
rs12268258	0.93[ASN][1000 genomes]
rs12268567	0.93[ASN][1000 genomes]
rs12268748	1.00[AMR][1000 genomes]
rs12268973	0.93[ASN][1000 genomes]
rs12269273	0.93[ASN][1000 genomes]
rs12269397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12269581	0.89[ASN][1000 genomes]
rs12762477	0.93[ASN][1000 genomes]
rs12766666	0.93[ASN][1000 genomes]
rs12766999	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12768423	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12768810	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12770407	0.93[ASN][1000 genomes]
rs12770929	0.86[ASN][1000 genomes]
rs12772691	0.93[ASN][1000 genomes]
rs12772888	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12773259	0.93[ASN][1000 genomes]
rs12774025	0.93[ASN][1000 genomes]
rs12774673	0.93[ASN][1000 genomes]
rs12775109	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12775236	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12777731	0.93[ASN][1000 genomes]
rs12779920	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12781341	1.00[AMR][1000 genomes]
rs12782074	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12782826	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12782985	0.84[ASN][1000 genomes]
rs34053165	1.00[AMR][1000 genomes]
rs34069859	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34106792	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34121910	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34155681	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34172298	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34294008	0.87[AFR][1000 genomes]
rs34408157	1.00[AMR][1000 genomes]
rs34435942	0.93[ASN][1000 genomes]
rs34441471	0.93[ASN][1000 genomes]
rs34567123	0.93[ASN][1000 genomes]
rs34697697	0.86[ASN][1000 genomes]
rs34764720	1.00[AMR][1000 genomes]
rs34766696	0.93[ASN][1000 genomes]
rs34828130	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34891234	0.86[ASN][1000 genomes]
rs34932539	1.00[AMR][1000 genomes]
rs34981982	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34981983	1.00[AMR][1000 genomes]
rs34988621	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35112234	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35124707	0.84[ASN][1000 genomes]
rs35154868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379554	0.83[ASN][1000 genomes]
rs35403041	0.93[ASN][1000 genomes]
rs35491428	1.00[AMR][1000 genomes]
rs35499404	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35506876	1.00[AMR][1000 genomes]
rs35966152	0.93[ASN][1000 genomes]
rs36058971	0.93[ASN][1000 genomes]
rs36106238	0.87[AFR][1000 genomes]
rs36124554	0.90[ASN][1000 genomes]
rs55823315	1.00[AMR][1000 genomes]
rs71497709	1.00[AMR][1000 genomes]
rs71502155	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs71502163	0.87[ASN][1000 genomes]
rs71502164	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs71502171	0.93[ASN][1000 genomes]
rs71502172	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs71502182	0.93[ASN][1000 genomes]
rs71502186	0.93[ASN][1000 genomes]
rs71502187	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71502188	0.93[ASN][1000 genomes]
rs71502189	0.87[ASN][1000 genomes]
rs71502190	0.93[ASN][1000 genomes]
rs71503917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71503918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71503919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71503920	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71503921	0.86[ASN][1000 genomes]
rs71503953	1.00[AMR][1000 genomes]
rs71505606	1.00[AMR][1000 genomes]
rs9663354	0.89[ASN][1000 genomes]
rs9663839	0.93[ASN][1000 genomes]
rs9664968	0.93[ASN][1000 genomes]
rs9703023	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381019	chr10:42379843-42797311	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3327265	chr10:42383108-42800080	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3353947	chr10:42396093-42662055	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3410118	chr10:42399439-42817641	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1035511	chr10:42433540-42636467	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1050409	chr10:42433540-42690550	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1041974	chr10:42433540-42760904	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1052577	chr10:42433540-42827991	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1036341	chr10:42433540-42853111	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1036366	chr10:42433540-42853690	ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv2757380	chr10:42433540-42929116	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv2759745	chr10:42433540-42929116	Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv1044537	chr10:42463534-42635506	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1042307	chr10:42477859-42655660	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv482591	chr10:42492996-42642328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv437669	chr10:42523670-42608040	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1049608	chr10:42525112-42820273	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv550616	chr10:42533318-42667035	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv550625	chr10:42596844-42820806	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	esv3507249	chr10:42599639-42663426	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	esv3507250	chr10:42599639-42663426	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42602200-42605800	Weak transcription	Monocytes-CD14+_RO01746	blood

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