Variant report

Variant	rs12251410
Chromosome Location	chr10:38885853-38885854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10159957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11266026	1.00[EUR][1000 genomes]
rs11499297	1.00[EUR][1000 genomes]
rs11499340	1.00[EUR][1000 genomes]
rs11499346	1.00[EUR][1000 genomes]
rs11499354	1.00[EUR][1000 genomes]
rs11499360	1.00[EUR][1000 genomes]
rs11499362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11499363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240502	1.00[EUR][1000 genomes]
rs12242371	1.00[EUR][1000 genomes]
rs12242787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12243517	1.00[EUR][1000 genomes]
rs12244894	1.00[AMR][1000 genomes]
rs12246416	1.00[EUR][1000 genomes]
rs12247170	1.00[EUR][1000 genomes]
rs12251878	1.00[EUR][1000 genomes]
rs12252159	1.00[ASN][1000 genomes]
rs12252325	1.00[EUR][1000 genomes]
rs12255371	0.86[ASN][1000 genomes]
rs12255875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258801	1.00[EUR][1000 genomes]
rs12259134	1.00[AMR][1000 genomes]
rs12261884	1.00[AMR][1000 genomes]
rs12262406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262762	1.00[AMR][1000 genomes]
rs12263276	1.00[EUR][1000 genomes]
rs12267505	1.00[EUR][1000 genomes]
rs12268109	1.00[EUR][1000 genomes]
rs12268567	0.83[EUR][1000 genomes]
rs12268748	1.00[AMR][1000 genomes]
rs12269397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269581	1.00[EUR][1000 genomes]
rs12766999	1.00[EUR][1000 genomes]
rs12768423	1.00[AMR][1000 genomes]
rs12770407	1.00[EUR][1000 genomes]
rs12772691	0.83[EUR][1000 genomes]
rs12772888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12775109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12775236	1.00[EUR][1000 genomes]
rs12781341	1.00[AMR][1000 genomes]
rs34053165	1.00[AMR][1000 genomes]
rs34069859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34172298	1.00[EUR][1000 genomes]
rs34294008	1.00[EUR][1000 genomes]
rs34408157	1.00[AMR][1000 genomes]
rs34435942	1.00[EUR][1000 genomes]
rs34764720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34932539	1.00[AMR][1000 genomes]
rs34981982	1.00[EUR][1000 genomes]
rs34981983	1.00[AMR][1000 genomes]
rs35154868	1.00[AMR][1000 genomes]
rs35270079	0.83[EUR][1000 genomes]
rs35491428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35499404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35506876	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36106238	1.00[EUR][1000 genomes]
rs55823315	1.00[AMR][1000 genomes]
rs71497709	1.00[AMR][1000 genomes]
rs71502187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503921	1.00[EUR][1000 genomes]
rs71503944	1.00[ASN][1000 genomes]
rs71503953	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71503956	0.90[AFR][1000 genomes]
rs71505606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv2762857	chr10:38733507-39076221	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv550422	chr10:38741777-38888745	Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3422361	chr10:38773902-39120597	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv550429	chr10:38774877-38886805	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv550434	chr10:38778034-39154633	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv550450	chr10:38794982-38888335	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv550451	chr10:38794982-38982218	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv550454	chr10:38796720-38983343	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv3424232	chr10:38807904-39121147	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	esv3434033	chr10:38868836-38892444	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3362937	chr10:38868836-38894444	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv947863	chr10:38868836-38898870	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv2758214	chr10:38868836-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	esv15473	chr10:38868867-38889034	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv550467	chr10:38869176-38886051	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv550468	chr10:38869176-38886805	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv550469	chr10:38869176-38887589	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv550470	chr10:38869176-38888335	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv550471	chr10:38869176-38888745	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv550472	chr10:38869176-38936824	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv550473	chr10:38869176-38965132	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv550474	chr10:38869176-38970700	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv550475	chr10:38869176-38990755	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
33	nsv550476	chr10:38869176-39005603	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
34	nsv550477	chr10:38869176-39154633	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
35	nsv550486	chr10:38869663-38886805	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv550491	chr10:38870218-39023068	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv550494	chr10:38870648-38887589	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv550495	chr10:38870648-38888335	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv550496	chr10:38870648-38990755	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
40	nsv550500	chr10:38871056-38886805	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
41	nsv550501	chr10:38871056-38888335	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
42	nsv550502	chr10:38871056-38888745	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
43	nsv550503	chr10:38871056-38970700	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
44	esv3442702	chr10:38871309-39150949	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
45	nsv550509	chr10:38871396-38886805	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	nsv550517	chr10:38874285-38888335	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv550518	chr10:38874285-38888745	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv550524	chr10:38874654-38887589	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv550527	chr10:38875290-38886805	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv550528	chr10:38875290-38887589	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
7	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
10	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
14	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr10:38869000-38888800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:38869000-38888800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:38869000-38888800	ZNF genes & repeats	Liver	Liver
21	chr10:38869000-38888800	ZNF genes & repeats	Fetal Brain Male	brain
22	chr10:38869000-38888800	ZNF genes & repeats	HUVEC	blood vessel
23	chr10:38869000-38889000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr10:38869000-38889000	ZNF genes & repeats	HepG2	liver
25	chr10:38871600-38888600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr10:38873400-38888800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:38882000-38887000	Weak transcription	NHDF-Ad	bronchial
28	chr10:38885000-38886200	Weak transcription	K562	blood

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