Variant report

Variant	rs12271867
Chromosome Location	chr11:34862302-34862303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34861723..34863511-chr11:34864599..34867573,2	K562	blood:
2	chr11:34843450..34845842-chr11:34860291..34863263,2	MCF-7	breast:
3	chr11:34775760..34778139-chr11:34861633..34864027,2	K562	blood:
4	chr11:34861859..34862922-chr11:34911325..34913157,5	MCF-7	breast:
5	chr11:34623825..34626505-chr11:34860564..34863481,2	K562	blood:

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10488805	1.00[ASN][1000 genomes]
rs1049333	0.90[ASN][1000 genomes]
rs10836316	1.00[ASN][1000 genomes]
rs11032891	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032894	1.00[ASN][1000 genomes]
rs11032895	1.00[ASN][1000 genomes]
rs11032898	1.00[ASN][1000 genomes]
rs11032899	1.00[ASN][1000 genomes]
rs11032903	1.00[ASN][1000 genomes]
rs11032907	0.83[ASN][1000 genomes]
rs11032939	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032956	1.00[ASN][1000 genomes]
rs11032958	1.00[ASN][1000 genomes]
rs11032959	1.00[ASN][1000 genomes]
rs11032960	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11032961	1.00[ASN][1000 genomes]
rs11032963	1.00[ASN][1000 genomes]
rs11032970	1.00[ASN][1000 genomes]
rs12272820	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273167	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274680	1.00[ASN][1000 genomes]
rs12276679	1.00[ASN][1000 genomes]
rs12278318	1.00[ASN][1000 genomes]
rs12279952	1.00[ASN][1000 genomes]
rs12280958	1.00[ASN][1000 genomes]
rs12284844	1.00[ASN][1000 genomes]
rs12290759	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291039	1.00[ASN][1000 genomes]
rs12292931	1.00[ASN][1000 genomes]
rs12292993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294339	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12294397	1.00[ASN][1000 genomes]
rs1509659	1.00[ASN][1000 genomes]
rs1509660	1.00[ASN][1000 genomes]
rs16926365	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926479	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926673	0.90[ASN][1000 genomes]
rs17362114	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364197	0.90[ASN][1000 genomes]
rs17436343	0.90[ASN][1000 genomes]
rs17711539	0.90[ASN][1000 genomes]
rs17712273	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828299	1.00[ASN][1000 genomes]
rs2077926	0.83[ASN][1000 genomes]
rs41512444	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796371	1.00[ASN][1000 genomes]
rs56061305	1.00[ASN][1000 genomes]
rs56922113	1.00[ASN][1000 genomes]
rs57611620	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58127349	1.00[ASN][1000 genomes]
rs59676516	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760973	1.00[ASN][1000 genomes]
rs61882175	1.00[ASN][1000 genomes]
rs6484738	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7106831	1.00[ASN][1000 genomes]
rs7111695	1.00[ASN][1000 genomes]
rs7114359	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114970	0.91[ASN][1000 genomes]
rs7115217	1.00[ASN][1000 genomes]
rs7115749	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7119807	1.00[ASN][1000 genomes]
rs7120509	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122048	1.00[ASN][1000 genomes]
rs7123029	1.00[ASN][1000 genomes]
rs7124099	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129517	1.00[ASN][1000 genomes]
rs7129533	1.00[ASN][1000 genomes]
rs7130678	1.00[ASN][1000 genomes]
rs7130774	1.00[ASN][1000 genomes]
rs7131229	1.00[ASN][1000 genomes]
rs7131272	1.00[ASN][1000 genomes]
rs7924969	1.00[ASN][1000 genomes]
rs7927857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929287	1.00[ASN][1000 genomes]
rs7932461	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936426	1.00[ASN][1000 genomes]
rs7936983	1.00[ASN][1000 genomes]
rs7941937	1.00[ASN][1000 genomes]
rs7945524	1.00[ASN][1000 genomes]
rs7947848	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34859200-34863400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:34859400-34871800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:34859800-34863600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:34861600-34863200	Enhancers	Esophagus	oesophagus
6	chr11:34862200-34862400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr11:34862200-34862600	Enhancers	Pancreas	Pancrea
8	chr11:34862200-34862600	Enhancers	Stomach Mucosa	stomach
9	chr11:34862200-34863000	Enhancers	HepG2	liver
10	chr11:34862200-34863200	Enhancers	Rectal Mucosa Donor 31	rectum

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