Variant report

Variant	rs12273167
Chromosome Location	chr11:34868373-34868374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34865938..34868708-chr11:34870452..34873276,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10488805	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1049333	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836316	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032891	1.00[ASN][1000 genomes]
rs11032894	1.00[ASN][1000 genomes]
rs11032895	1.00[ASN][1000 genomes]
rs11032898	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032899	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032903	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032907	0.83[ASN][1000 genomes]
rs11032939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032956	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032958	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032959	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032960	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032961	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032963	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032970	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274680	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276679	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278318	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12279952	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280958	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12284844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290759	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291039	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292931	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292993	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294339	1.00[ASN][1000 genomes]
rs12294397	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509659	1.00[ASN][1000 genomes]
rs1509660	1.00[ASN][1000 genomes]
rs16926365	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926479	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926673	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362114	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364197	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17436343	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17711429	0.83[EUR][1000 genomes]
rs17711539	0.90[ASN][1000 genomes]
rs17712273	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828299	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2077926	0.83[ASN][1000 genomes]
rs41512444	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796371	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56061305	1.00[ASN][1000 genomes]
rs56922113	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611620	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58127349	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59676516	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760973	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484738	1.00[ASN][1000 genomes]
rs7106831	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7111695	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7114359	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114970	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115217	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115749	1.00[ASN][1000 genomes]
rs7119807	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122048	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7123029	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7124099	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129517	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7129533	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7130678	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7130774	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7131229	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7131272	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7924969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927857	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929287	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936426	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936983	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945524	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947848	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34859400-34871800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34867800-34868400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:34868200-34868400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:34868200-34868400	Bivalent Enhancer	NHDF-Ad	bronchial

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