Variant report

Variant	rs59676516
Chromosome Location	chr11:34918631-34918632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10488805	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1049333	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836316	1.00[ASN][1000 genomes]
rs11032891	1.00[ASN][1000 genomes]
rs11032894	1.00[ASN][1000 genomes]
rs11032895	1.00[ASN][1000 genomes]
rs11032898	1.00[ASN][1000 genomes]
rs11032899	1.00[ASN][1000 genomes]
rs11032903	1.00[ASN][1000 genomes]
rs11032907	0.83[ASN][1000 genomes]
rs11032939	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032956	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032958	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032959	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032960	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032963	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271867	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272820	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273167	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274680	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276679	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278318	1.00[ASN][1000 genomes]
rs12279952	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280958	1.00[ASN][1000 genomes]
rs12284844	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291039	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292931	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292993	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294339	1.00[ASN][1000 genomes]
rs12294397	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509659	1.00[ASN][1000 genomes]
rs1509660	1.00[ASN][1000 genomes]
rs16926365	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926479	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926673	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364197	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17436343	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17711539	0.90[ASN][1000 genomes]
rs17712273	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828299	1.00[ASN][1000 genomes]
rs2077926	0.83[ASN][1000 genomes]
rs41512444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796371	1.00[ASN][1000 genomes]
rs56061305	1.00[ASN][1000 genomes]
rs56922113	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611620	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58127349	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760973	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484738	1.00[ASN][1000 genomes]
rs7106831	1.00[ASN][1000 genomes]
rs7111695	1.00[ASN][1000 genomes]
rs7114359	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114970	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115217	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115749	1.00[ASN][1000 genomes]
rs7119807	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122048	1.00[ASN][1000 genomes]
rs7123029	1.00[ASN][1000 genomes]
rs7124099	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124428	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129517	1.00[ASN][1000 genomes]
rs7129533	1.00[ASN][1000 genomes]
rs7130678	1.00[ASN][1000 genomes]
rs7130774	1.00[ASN][1000 genomes]
rs7131229	1.00[ASN][1000 genomes]
rs7131272	1.00[ASN][1000 genomes]
rs7924969	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927857	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929287	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932461	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936426	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936983	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945524	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947848	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv8807	chr11:34912167-34930289	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757436	chr11:34913315-34963728	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
5	esv2759817	chr11:34913315-34963728	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
6	esv34511	chr11:34914124-34942836	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
7	esv2756165	chr11:34914137-34942836	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
2	chr11:34891200-34919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:34895000-34921200	Weak transcription	Right Ventricle	heart
5	chr11:34897000-34919200	Weak transcription	Fetal Stomach	stomach
6	chr11:34897600-34919200	Weak transcription	Fetal Heart	heart
7	chr11:34898200-34926800	Weak transcription	HSMMtube	muscle
8	chr11:34900200-34921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:34901400-34920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:34902000-34921600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:34903600-34919200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:34908400-34921200	Weak transcription	Aorta	Aorta
13	chr11:34908800-34921000	Weak transcription	Ovary	ovary
14	chr11:34909200-34919200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:34909800-34921600	Weak transcription	Stomach Mucosa	stomach
16	chr11:34910200-34919400	Weak transcription	Thymus	Thymus
17	chr11:34910600-34919400	Weak transcription	Placenta	Placenta
18	chr11:34912400-34919200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:34913400-34920800	Weak transcription	A549	lung
20	chr11:34913400-34921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:34913600-34920800	Weak transcription	HepG2	liver
22	chr11:34913600-34929800	Weak transcription	K562	blood
23	chr11:34914200-34918800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr11:34917600-34931000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:34917800-34919800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr11:34917800-34925000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:34918000-34926200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:34918200-34919000	ZNF genes & repeats	Dnd41	blood
29	chr11:34918200-34919800	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr11:34918200-34920200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr11:34918200-34923800	ZNF genes & repeats	Primary T cells from cord blood	blood
32	chr11:34918200-34923800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
33	chr11:34918200-34924600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
34	chr11:34918200-34925800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:34918200-34928600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr11:34918600-34919400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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