Variant report

Variant	rs2077926
Chromosome Location	chr11:34886601-34886602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34618804..34621129-chr11:34885676..34887484,2	K562	blood:

Extended variants
information (count: 202 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10488801	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10488803	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10488804	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10488805	0.83[ASN][1000 genomes]
rs1049306	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1049307	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10836316	0.83[ASN][1000 genomes]
rs11032891	0.83[ASN][1000 genomes]
rs11032894	0.83[ASN][1000 genomes]
rs11032895	0.83[ASN][1000 genomes]
rs11032898	0.83[ASN][1000 genomes]
rs11032899	0.83[ASN][1000 genomes]
rs11032903	0.83[ASN][1000 genomes]
rs11032907	1.00[ASN][1000 genomes]
rs11032922	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11032923	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11032925	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11032926	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11032927	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032934	0.90[EUR][1000 genomes]
rs11032935	0.90[EUR][1000 genomes]
rs11032937	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032938	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032939	0.83[ASN][1000 genomes]
rs11032940	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032941	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032942	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11032956	0.83[ASN][1000 genomes]
rs11032958	0.83[ASN][1000 genomes]
rs11032959	0.83[ASN][1000 genomes]
rs11032960	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11032961	0.83[ASN][1000 genomes]
rs11032963	0.83[ASN][1000 genomes]
rs11032970	0.83[ASN][1000 genomes]
rs11500295	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11500296	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11500297	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11500299	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12270487	0.90[EUR][1000 genomes]
rs12271341	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12271867	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12272820	0.83[ASN][1000 genomes]
rs12273167	0.83[ASN][1000 genomes]
rs12273271	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12274383	0.90[EUR][1000 genomes]
rs12274490	0.90[EUR][1000 genomes]
rs12274680	0.83[ASN][1000 genomes]
rs12275275	0.90[EUR][1000 genomes]
rs12275277	0.90[EUR][1000 genomes]
rs12275339	0.90[EUR][1000 genomes]
rs12275620	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12275911	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12276679	0.83[ASN][1000 genomes]
rs12276735	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12278245	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12278318	0.83[ASN][1000 genomes]
rs12278785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12279553	0.90[EUR][1000 genomes]
rs12279952	0.83[ASN][1000 genomes]
rs12280958	0.83[ASN][1000 genomes]
rs12282098	0.90[EUR][1000 genomes]
rs12282382	0.90[EUR][1000 genomes]
rs12282419	0.90[EUR][1000 genomes]
rs12282552	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12283763	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12284844	0.83[ASN][1000 genomes]
rs12285604	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12285752	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12286436	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12286442	0.90[EUR][1000 genomes]
rs12288594	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12288628	0.90[EUR][1000 genomes]
rs12289218	0.90[EUR][1000 genomes]
rs12290759	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12291039	0.83[ASN][1000 genomes]
rs12292719	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12292931	0.83[ASN][1000 genomes]
rs12292993	0.83[ASN][1000 genomes]
rs12294047	0.90[EUR][1000 genomes]
rs12294125	0.90[EUR][1000 genomes]
rs12294339	0.83[ASN][1000 genomes]
rs12294397	0.83[ASN][1000 genomes]
rs12294594	0.89[EUR][1000 genomes]
rs12295408	0.90[EUR][1000 genomes]
rs12295537	0.90[EUR][1000 genomes]
rs12385808	0.87[EUR][1000 genomes]
rs1509659	0.83[ASN][1000 genomes]
rs1509660	0.83[ASN][1000 genomes]
rs16926365	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs16926431	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16926448	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16926479	0.83[ASN][1000 genomes]
rs17362114	0.83[ASN][1000 genomes]
rs17712273	0.83[ASN][1000 genomes]
rs1828299	0.83[ASN][1000 genomes]
rs2033359	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3763924	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763925	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763926	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763929	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763930	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763931	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3763932	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763933	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763934	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763935	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763936	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3794161	0.90[EUR][1000 genomes]
rs3794162	0.90[EUR][1000 genomes]
rs3794163	0.90[EUR][1000 genomes]
rs3794165	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3794166	0.90[EUR][1000 genomes]
rs3794170	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3794171	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3818393	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3818396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3818397	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3818401	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3887071	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41512444	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs55796371	0.83[ASN][1000 genomes]
rs56061305	0.83[ASN][1000 genomes]
rs56898019	0.90[EUR][1000 genomes]
rs56922113	0.83[ASN][1000 genomes]
rs57257751	0.90[EUR][1000 genomes]
rs57611620	0.83[ASN][1000 genomes]
rs58127349	0.83[ASN][1000 genomes]
rs58519774	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59676516	0.83[ASN][1000 genomes]
rs60346281	0.89[EUR][1000 genomes]
rs60632777	0.90[EUR][1000 genomes]
rs60774328	0.87[EUR][1000 genomes]
rs61446941	0.90[EUR][1000 genomes]
rs61760973	0.83[ASN][1000 genomes]
rs61882175	0.83[ASN][1000 genomes]
rs6484738	0.83[ASN][1000 genomes]
rs6484748	0.90[EUR][1000 genomes]
rs7101458	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7102259	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7104418	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7104829	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7105141	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7105167	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7105174	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7106831	0.83[ASN][1000 genomes]
rs7110223	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7111607	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7111695	0.83[ASN][1000 genomes]
rs7113708	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7114359	0.83[ASN][1000 genomes]
rs7115153	0.90[EUR][1000 genomes]
rs7115217	0.83[ASN][1000 genomes]
rs7115409	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7115749	0.83[ASN][1000 genomes]
rs7116386	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116411	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7119524	0.90[EUR][1000 genomes]
rs7119807	0.83[ASN][1000 genomes]
rs7119958	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7120509	0.83[ASN][1000 genomes]
rs7121117	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7121341	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7122048	0.83[ASN][1000 genomes]
rs7123029	0.83[ASN][1000 genomes]
rs7124099	0.83[ASN][1000 genomes]
rs7124428	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7126659	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7127669	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7127715	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7127846	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7129517	0.83[ASN][1000 genomes]
rs7129533	0.83[ASN][1000 genomes]
rs7130678	0.83[ASN][1000 genomes]
rs7130774	0.83[ASN][1000 genomes]
rs7130867	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7130874	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7131118	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7131229	0.83[ASN][1000 genomes]
rs7131272	0.83[ASN][1000 genomes]
rs7924409	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7924507	0.87[EUR][1000 genomes]
rs7924969	0.83[ASN][1000 genomes]
rs7925118	0.90[EUR][1000 genomes]
rs7927857	0.83[ASN][1000 genomes]
rs7929220	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7929287	0.83[ASN][1000 genomes]
rs7931814	0.90[EUR][1000 genomes]
rs7932461	0.83[ASN][1000 genomes]
rs7936426	0.83[ASN][1000 genomes]
rs7936983	0.83[ASN][1000 genomes]
rs7940226	0.90[EUR][1000 genomes]
rs7941937	0.83[ASN][1000 genomes]
rs7945013	0.87[EUR][1000 genomes]
rs7945524	0.83[ASN][1000 genomes]
rs7947650	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7947848	0.83[ASN][1000 genomes]
rs7952208	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7952624	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7952629	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9804643	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2077926	APIP	cis	lung	GTEx
rs2077926	APIP	cis	Esophagus Muscularis	GTEx
rs2077926	APIP	cis	uninvolved skin	skin_eQTL
rs2077926	APIP	cis	Artery Aorta	GTEx
rs2077926	APIP	cis	Thyroid	GTEx
rs2077926	APIP	cis	Esophagus Mucosa	GTEx
rs2077926	APIP	cis	Muscle Skeletal	GTEx
rs2077926	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs2077926	APIP	cis	Adipose Subcutaneous	GTEx
rs2077926	APIP	cis	Heart Left Ventricle	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34876600-34896000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34878200-34891400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34880200-34898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
7	chr11:34882400-34886800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:34885000-34896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:34885400-34888600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:34885600-34887000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:34885600-34888200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:34885600-34888600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:34886000-34903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:34886400-34887200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:34886400-34887600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:34886400-34887600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr11:34886400-34903400	Weak transcription	Primary B cells from cord blood	blood
18	chr11:34886600-34886800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:34886600-34887000	Enhancers	Esophagus	oesophagus
20	chr11:34886600-34887000	Enhancers	Placenta	Placenta
21	chr11:34886600-34887200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:34886600-34888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:34886600-34896000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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