Variant report

Variant	rs11032907
Chromosome Location	chr11:34886892-34886893
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34618804..34621129-chr11:34885676..34887484,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10488805	0.83[ASN][1000 genomes]
rs10836316	0.83[ASN][1000 genomes]
rs11032891	0.83[ASN][1000 genomes]
rs11032894	0.83[ASN][1000 genomes]
rs11032895	0.83[ASN][1000 genomes]
rs11032898	0.83[ASN][1000 genomes]
rs11032899	0.83[ASN][1000 genomes]
rs11032903	0.83[ASN][1000 genomes]
rs11032939	0.83[ASN][1000 genomes]
rs11032943	0.85[CEU][hapmap]
rs11032956	0.83[ASN][1000 genomes]
rs11032958	0.83[ASN][1000 genomes]
rs11032959	0.83[ASN][1000 genomes]
rs11032960	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs11032961	0.83[ASN][1000 genomes]
rs11032963	0.83[ASN][1000 genomes]
rs11032970	0.83[ASN][1000 genomes]
rs12271867	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12272820	0.83[ASN][1000 genomes]
rs12273167	0.83[ASN][1000 genomes]
rs12274680	0.83[ASN][1000 genomes]
rs12276679	0.83[ASN][1000 genomes]
rs12278318	0.83[ASN][1000 genomes]
rs12279952	0.83[ASN][1000 genomes]
rs12280958	0.83[ASN][1000 genomes]
rs12284844	0.83[ASN][1000 genomes]
rs12290759	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12291039	0.83[ASN][1000 genomes]
rs12292931	0.83[ASN][1000 genomes]
rs12292993	0.83[ASN][1000 genomes]
rs12294339	0.83[ASN][1000 genomes]
rs12294397	0.83[ASN][1000 genomes]
rs1509659	0.83[ASN][1000 genomes]
rs1509660	0.83[ASN][1000 genomes]
rs16926365	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs16926479	0.83[ASN][1000 genomes]
rs17362114	0.83[ASN][1000 genomes]
rs17712273	0.83[ASN][1000 genomes]
rs1828299	0.83[ASN][1000 genomes]
rs2077926	1.00[ASN][1000 genomes]
rs2102475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2163377	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3962032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41512444	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs55796371	0.83[ASN][1000 genomes]
rs56061305	0.83[ASN][1000 genomes]
rs56922113	0.83[ASN][1000 genomes]
rs57611620	0.83[ASN][1000 genomes]
rs58127349	0.83[ASN][1000 genomes]
rs59676516	0.83[ASN][1000 genomes]
rs61760973	0.83[ASN][1000 genomes]
rs61882175	0.83[ASN][1000 genomes]
rs6484738	0.83[ASN][1000 genomes]
rs7106831	0.83[ASN][1000 genomes]
rs7111695	0.83[ASN][1000 genomes]
rs7114359	0.83[ASN][1000 genomes]
rs7115217	0.83[ASN][1000 genomes]
rs7115749	0.83[ASN][1000 genomes]
rs7118017	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7119807	0.83[ASN][1000 genomes]
rs7120509	0.83[ASN][1000 genomes]
rs7122048	0.83[ASN][1000 genomes]
rs7123029	0.83[ASN][1000 genomes]
rs7124099	0.83[ASN][1000 genomes]
rs7124428	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs7126410	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7129517	0.83[ASN][1000 genomes]
rs7129533	0.83[ASN][1000 genomes]
rs7130678	0.83[ASN][1000 genomes]
rs7130774	0.83[ASN][1000 genomes]
rs7131229	0.83[ASN][1000 genomes]
rs7131272	0.83[ASN][1000 genomes]
rs7924969	0.83[ASN][1000 genomes]
rs7927857	0.83[ASN][1000 genomes]
rs7929287	0.83[ASN][1000 genomes]
rs7932461	0.83[ASN][1000 genomes]
rs7936426	0.83[ASN][1000 genomes]
rs7936983	0.83[ASN][1000 genomes]
rs7941937	0.83[ASN][1000 genomes]
rs7945524	0.83[ASN][1000 genomes]
rs7947848	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11032907	PDHX	cis	multi-tissue	Pritchard
rs11032907	APIP	cis	lymphoblastoid	seeQTL
rs11032907	PDHX	cis	cerebellum	SCAN
rs11032907	APIP	Cis_1M	lymphoblastoid	RTeQTL
rs11032907	PDHX	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34876600-34896000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34878200-34891400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34880200-34898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
7	chr11:34885000-34896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:34885400-34888600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:34885600-34887000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:34885600-34888200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:34885600-34888600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:34886000-34903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:34886400-34887200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:34886400-34887600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:34886400-34887600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr11:34886400-34903400	Weak transcription	Primary B cells from cord blood	blood
17	chr11:34886600-34887000	Enhancers	Esophagus	oesophagus
18	chr11:34886600-34887000	Enhancers	Placenta	Placenta
19	chr11:34886600-34887200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:34886600-34888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:34886600-34896000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:34886800-34888400	Enhancers	Adipose Nuclei	Adipose
23	chr11:34886800-34904400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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