Variant report

Variant	rs41512444
Chromosome Location	chr11:34959234-34959235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34954216..34955992-chr11:34958074..34960760,2	MCF-7	breast:
2	chr11:34936733..34940563-chr11:34957640..34960093,4	K562	blood:
3	chr11:34954386..34956581-chr11:34957357..34959864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction
ENSG00000110435	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10488805	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1049333	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836316	1.00[ASN][1000 genomes]
rs11032891	1.00[ASN][1000 genomes]
rs11032894	1.00[ASN][1000 genomes]
rs11032895	1.00[ASN][1000 genomes]
rs11032898	1.00[ASN][1000 genomes]
rs11032899	1.00[ASN][1000 genomes]
rs11032903	1.00[ASN][1000 genomes]
rs11032907	0.83[ASN][1000 genomes]
rs11032939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032956	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032958	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032959	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032963	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271867	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272820	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273167	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274680	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276679	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278318	1.00[ASN][1000 genomes]
rs12279952	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280958	1.00[ASN][1000 genomes]
rs12284844	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290759	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291039	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292931	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292993	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294339	1.00[ASN][1000 genomes]
rs12294397	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509659	1.00[ASN][1000 genomes]
rs1509660	1.00[ASN][1000 genomes]
rs16926365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926673	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17362114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364197	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17436343	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17711539	0.90[ASN][1000 genomes]
rs17712273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828299	1.00[ASN][1000 genomes]
rs2077926	0.83[ASN][1000 genomes]
rs55796371	1.00[ASN][1000 genomes]
rs56061305	1.00[ASN][1000 genomes]
rs56922113	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58127349	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59676516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760973	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484738	1.00[ASN][1000 genomes]
rs7106831	1.00[ASN][1000 genomes]
rs7111695	1.00[ASN][1000 genomes]
rs7114359	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114970	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115217	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115749	1.00[ASN][1000 genomes]
rs7119807	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122048	1.00[ASN][1000 genomes]
rs7123029	1.00[ASN][1000 genomes]
rs7124099	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124428	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129517	1.00[ASN][1000 genomes]
rs7129533	1.00[ASN][1000 genomes]
rs7130678	1.00[ASN][1000 genomes]
rs7130774	1.00[ASN][1000 genomes]
rs7131229	1.00[ASN][1000 genomes]
rs7131272	1.00[ASN][1000 genomes]
rs7924969	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927857	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929287	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932461	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936426	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936983	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945524	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947848	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2757436	chr11:34913315-34963728	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759817	chr11:34913315-34963728	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
5	esv2754010	chr11:34940724-35001024	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1055116	chr11:34940737-34962291	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34938800-34990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:34939200-35000000	Weak transcription	Thymus	Thymus
3	chr11:34939600-34962600	Weak transcription	Right Ventricle	heart
4	chr11:34939800-34960400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:34940000-34963800	Weak transcription	Spleen	Spleen
6	chr11:34940200-34970400	Weak transcription	Left Ventricle	heart
7	chr11:34940200-34984800	Weak transcription	Fetal Stomach	stomach
8	chr11:34940400-34959400	Weak transcription	Fetal Brain Female	brain
9	chr11:34940400-34962600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:34943800-34961600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:34948000-34990600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:34948000-35000400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:34948000-35006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:34948200-34960200	Weak transcription	HMEC	breast
15	chr11:34948200-34997000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:34948600-34990400	Weak transcription	HUVEC	blood vessel
17	chr11:34948800-34965000	Weak transcription	HSMM	muscle
18	chr11:34949000-34961200	Weak transcription	GM12878-XiMat	blood
19	chr11:34949200-34961000	Weak transcription	Osteobl	bone
20	chr11:34949200-34990400	Weak transcription	NHEK	skin
21	chr11:34949400-34960400	Weak transcription	Fetal Heart	heart
22	chr11:34950400-34991600	Weak transcription	NHLF	lung
23	chr11:34951000-34965200	Weak transcription	Gastric	stomach
24	chr11:34951000-34970400	Weak transcription	Aorta	Aorta
25	chr11:34951000-34970400	Weak transcription	Ovary	ovary
26	chr11:34951000-34981400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:34951400-34986600	Weak transcription	Fetal Thymus	thymus
28	chr11:34951600-34959800	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:34951600-34963400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:34951600-34992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:34951800-34970400	Weak transcription	Pancreas	Pancrea
32	chr11:34951800-34985000	Weak transcription	Lung	lung
33	chr11:34951800-34988200	Weak transcription	Fetal Intestine Small	intestine
34	chr11:34951800-35000200	Weak transcription	Psoas Muscle	Psoas
35	chr11:34952200-34962200	Weak transcription	Brain Substantia Nigra	brain
36	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
37	chr11:34952400-34990200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:34953600-34965000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:34954200-34959800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:34954200-34960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:34954400-34961800	Weak transcription	NH-A	brain
42	chr11:34954400-34969400	Weak transcription	Fetal Lung	lung
43	chr11:34954600-34965200	Weak transcription	Primary B cells from cord blood	blood
44	chr11:34954600-34978800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:34954600-34986600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:34954600-34987800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:34954600-34991200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:34954800-34961600	Weak transcription	NHDF-Ad	bronchial
49	chr11:34954800-34988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:34955000-34960200	Weak transcription	Adipose Nuclei	Adipose

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