Variant report

Variant	rs12272443
Chromosome Location	chr11:15906368-15906369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15906179..15908578-chr11:15915178..15917306,2	K562	blood:
2	chr11:15893121..15894660-chr11:15906120..15908174,2	K562	blood:
3	chr11:15906360..15909550-chr11:15909837..15912358,3	K562	blood:
4	chr11:15900204..15902494-chr11:15904827..15907387,2	K562	blood:
5	chr11:15905811..15907638-chr11:15937488..15939318,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11023748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275305	1.00[AMR][1000 genomes]
rs12280670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294831	1.00[AMR][1000 genomes]
rs59598471	1.00[AMR][1000 genomes]
rs61082352	1.00[AMR][1000 genomes]
rs6486267	1.00[AMR][1000 genomes]
rs7105627	1.00[AMR][1000 genomes]
rs7108600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130210	1.00[AMR][1000 genomes]
rs7939097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15898400-15908200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:15904200-15907000	Enhancers	Fetal Lung	lung
4	chr11:15904200-15907000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:15904200-15907600	Enhancers	Fetal Stomach	stomach
6	chr11:15904400-15906400	Enhancers	Adipose Nuclei	Adipose
7	chr11:15904400-15907200	Enhancers	Left Ventricle	heart
8	chr11:15904400-15907400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:15904400-15907600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:15904400-15907800	Enhancers	Fetal Brain Male	brain
11	chr11:15904600-15906600	Enhancers	Brain Anterior Caudate	brain
12	chr11:15904600-15907000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:15904800-15906800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:15904800-15908200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:15905000-15906400	Enhancers	K562	blood
16	chr11:15905000-15907600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:15905000-15907600	Enhancers	Fetal Brain Female	brain
18	chr11:15905200-15906400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:15905200-15906400	Enhancers	Brain Angular Gyrus	brain
20	chr11:15905400-15907200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:15905400-15908800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:15905600-15906600	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:15905600-15906800	Enhancers	Ovary	ovary
24	chr11:15905600-15907600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:15905600-15907600	Enhancers	Right Atrium	heart
26	chr11:15905800-15907400	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:15906000-15906600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:15906000-15907600	Weak transcription	Osteobl	bone
29	chr11:15906000-15908000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:15906000-15910400	Weak transcription	Fetal Kidney	kidney
31	chr11:15906200-15906800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:15906200-15906800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:15906200-15907200	Enhancers	Fetal Intestine Small	intestine
34	chr11:15906200-15907400	Enhancers	Fetal Intestine Large	intestine
35	chr11:15906200-15908000	Enhancers	Brain Germinal Matrix	brain

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