Variant report

Variant	rs7108600
Chromosome Location	chr11:15895296-15895297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11023748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023761	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275305	1.00[AMR][1000 genomes]
rs12280670	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294831	1.00[AMR][1000 genomes]
rs59598471	1.00[AMR][1000 genomes]
rs61082352	1.00[AMR][1000 genomes]
rs6486267	1.00[AMR][1000 genomes]
rs7105627	1.00[AMR][1000 genomes]
rs7127783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130210	1.00[AMR][1000 genomes]
rs7939097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15893000-15896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:15893200-15895800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:15894000-15895800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:15894000-15897000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:15894000-15897600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:15894200-15897800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:15894400-15897000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15894400-15897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:15894600-15897200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:15894800-15897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:15895200-15895400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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