Variant report

Variant	rs12280670
Chromosome Location	chr11:15905791-15905792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15891804..15893918-chr11:15903502..15905897,2	K562	blood:
2	chr11:15900204..15902494-chr11:15904827..15907387,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11023748	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023761	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274134	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275305	1.00[AMR][1000 genomes]
rs12293740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294831	1.00[AMR][1000 genomes]
rs59598471	1.00[AMR][1000 genomes]
rs61082352	1.00[AMR][1000 genomes]
rs6486267	1.00[AMR][1000 genomes]
rs7105627	1.00[AMR][1000 genomes]
rs7108600	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130210	1.00[AMR][1000 genomes]
rs7939097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15898400-15908200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:15901200-15906200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:15904200-15907000	Enhancers	Fetal Lung	lung
5	chr11:15904200-15907000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:15904200-15907600	Enhancers	Fetal Stomach	stomach
7	chr11:15904400-15906200	Enhancers	Brain Substantia Nigra	brain
8	chr11:15904400-15906400	Enhancers	Adipose Nuclei	Adipose
9	chr11:15904400-15907200	Enhancers	Left Ventricle	heart
10	chr11:15904400-15907400	Enhancers	Fetal Muscle Leg	muscle
11	chr11:15904400-15907600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:15904400-15907800	Enhancers	Fetal Brain Male	brain
13	chr11:15904600-15905800	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:15904600-15906200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:15904600-15906600	Enhancers	Brain Anterior Caudate	brain
16	chr11:15904600-15907000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:15904800-15906000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:15904800-15906000	Enhancers	Osteobl	bone
19	chr11:15904800-15906800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:15904800-15908200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:15905000-15906400	Enhancers	K562	blood
22	chr11:15905000-15907600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:15905000-15907600	Enhancers	Fetal Brain Female	brain
24	chr11:15905200-15905800	Enhancers	Brain Germinal Matrix	brain
25	chr11:15905200-15906000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:15905200-15906400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:15905200-15906400	Enhancers	Brain Angular Gyrus	brain
28	chr11:15905400-15907200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:15905400-15908800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:15905600-15905800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr11:15905600-15906200	Enhancers	Brain Hippocampus Middle	brain
32	chr11:15905600-15906600	Enhancers	Fetal Muscle Trunk	muscle
33	chr11:15905600-15906800	Enhancers	Ovary	ovary
34	chr11:15905600-15907600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:15905600-15907600	Enhancers	Right Atrium	heart

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