Variant report

Variant	rs12274134
Chromosome Location	chr11:15914144-15914145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15906546..15908430-chr11:15913226..15915549,2	K562	blood:
2	chr11:15913305..15915564-chr11:15919209..15921241,2	MCF-7	breast:
3	chr11:15912241..15914705-chr11:15921735..15923958,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11023748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275305	1.00[AMR][1000 genomes]
rs12280670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294831	1.00[AMR][1000 genomes]
rs59598471	1.00[AMR][1000 genomes]
rs61082352	1.00[AMR][1000 genomes]
rs6486267	1.00[AMR][1000 genomes]
rs7105627	1.00[AMR][1000 genomes]
rs7108600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130210	1.00[AMR][1000 genomes]
rs7939097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15906600-15914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:15907200-15914600	Weak transcription	Left Ventricle	heart
3	chr11:15907600-15914400	Weak transcription	Fetal Brain Female	brain
4	chr11:15907600-15914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:15908200-15917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:15910600-15914400	Weak transcription	Fetal Lung	lung
8	chr11:15911400-15914800	Weak transcription	Stomach Mucosa	stomach
9	chr11:15911400-15916000	Weak transcription	Spleen	Spleen
10	chr11:15911600-15914200	Weak transcription	K562	blood
11	chr11:15912000-15914600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:15912200-15914200	Weak transcription	Lung	lung
13	chr11:15912200-15914400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:15912200-15914600	Weak transcription	Right Atrium	heart
15	chr11:15912200-15914600	Weak transcription	HSMMtube	muscle
16	chr11:15912200-15915000	Weak transcription	Ovary	ovary
17	chr11:15912400-15914400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:15912400-15914400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:15912400-15914400	Weak transcription	Fetal Brain Male	brain
20	chr11:15912400-15914400	Weak transcription	Fetal Kidney	kidney
21	chr11:15912400-15914400	Weak transcription	HSMM	muscle
22	chr11:15912400-15914600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:15912400-15914600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:15912400-15914600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:15912600-15914200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:15912600-15914200	Weak transcription	Osteobl	bone
27	chr11:15912600-15914600	Weak transcription	NH-A	brain
28	chr11:15912800-15914200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:15913400-15914200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr11:15913800-15915400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:15913800-15915600	Enhancers	Placenta	Placenta
32	chr11:15913800-15915800	Enhancers	Primary hematopoietic stem cells	blood
33	chr11:15913800-15916000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:15913800-15916000	Enhancers	Fetal Heart	heart
35	chr11:15913800-15916600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:15914000-15914200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:15914000-15914600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:15914000-15915800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:15914000-15916200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:15914000-15916200	Enhancers	Fetal Stomach	stomach
41	chr11:15914000-15916400	Enhancers	Fetal Muscle Leg	muscle
42	chr11:15914000-15916400	Enhancers	Stomach Smooth Muscle	stomach

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