Variant report

Variant	rs12293740
Chromosome Location	chr11:15898449-15898450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11023748	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275305	1.00[AMR][1000 genomes]
rs12280670	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292100	0.82[AFR][1000 genomes]
rs12294831	1.00[AMR][1000 genomes]
rs59598471	1.00[AMR][1000 genomes]
rs61082352	1.00[AMR][1000 genomes]
rs6486267	1.00[AMR][1000 genomes]
rs7105627	1.00[AMR][1000 genomes]
rs7108600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130210	1.00[AMR][1000 genomes]
rs7939097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15895800-15900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:15896000-15899400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:15898000-15900400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:15898000-15904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:15898200-15899200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:15898400-15908200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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