Variant report

Variant	rs12274991
Chromosome Location	chr11:35353826-35353827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35353606..35355179-chr11:35363143..35365383,2	MCF-7	breast:
2	chr11:35351151..35353961-chr11:35376008..35377580,2	MCF-7	breast:
3	chr11:35345567..35348254-chr11:35351098..35354051,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11033067	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033072	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033077	0.87[ASN][1000 genomes]
rs11033092	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12269851	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12270176	1.00[EUR][1000 genomes]
rs12271412	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12276318	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12276739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12281268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12285197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12290877	1.00[EUR][1000 genomes]
rs12292906	0.85[ASN][1000 genomes]
rs16927393	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2236274	1.00[EUR][1000 genomes]
rs3794085	1.00[EUR][1000 genomes]
rs3794092	1.00[EUR][1000 genomes]
rs4083482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7123447	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7124363	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7124645	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7926298	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35347000-35356000	Weak transcription	NHLF	lung
3	chr11:35347800-35356000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:35348400-35356000	Weak transcription	NHDF-Ad	bronchial
5	chr11:35348400-35356600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:35348400-35358000	Weak transcription	Hela-S3	cervix
7	chr11:35349200-35354200	Enhancers	Primary T cells from cord blood	blood
8	chr11:35349200-35354600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:35349200-35354800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:35349200-35357000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:35350400-35358200	Weak transcription	Placenta	Placenta
12	chr11:35350600-35354800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr11:35350800-35356200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr11:35351200-35354000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:35351200-35354000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:35351200-35354000	Enhancers	Pancreas	Pancrea
17	chr11:35351200-35354400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:35351200-35354600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr11:35351200-35354600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:35351400-35354400	Enhancers	Brain Angular Gyrus	brain
21	chr11:35351400-35357200	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:35352000-35354600	Enhancers	Brain Substantia Nigra	brain
23	chr11:35352200-35354600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:35352400-35354600	Enhancers	Brain Anterior Caudate	brain
25	chr11:35352400-35355600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:35352600-35354200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:35352800-35354000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
29	chr11:35353000-35356000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:35353000-35356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:35353200-35354000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:35353200-35354000	Enhancers	Gastric	stomach
34	chr11:35353200-35354600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:35353200-35354600	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr11:35353400-35354000	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr11:35353400-35354400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr11:35353400-35354600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr11:35353400-35355600	Weak transcription	GM12878-XiMat	blood
40	chr11:35353400-35356200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:35353600-35354000	Active TSS	Fetal Heart	heart
42	chr11:35353600-35355400	Weak transcription	Primary B cells from cord blood	blood
43	chr11:35353800-35354000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:35353800-35354600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:35353800-35354600	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:35353800-35358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:35353800-35359000	Weak transcription	K562	blood

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