Variant report

Variant	rs12276318
Chromosome Location	chr11:35359706-35359707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35358242..35359816-chr11:35412512..35414098,2	MCF-7	breast:
2	chr11:35358795..35361684-chr11:35361699..35364606,3	K562	blood:
3	chr11:35359115..35360850-chr11:35385171..35387976,3	MCF-7	breast:
4	chr11:35323422..35325913-chr11:35358470..35360620,2	MCF-7	breast:
5	chr11:35358486..35360321-chr11:35376414..35377943,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11033067	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11033072	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033077	0.96[ASN][1000 genomes]
rs11033092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269851	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12270176	1.00[EUR][1000 genomes]
rs12271412	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12274991	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12276739	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12281268	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12285197	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12290877	1.00[EUR][1000 genomes]
rs12292906	0.98[ASN][1000 genomes]
rs16927309	0.90[YRI][hapmap]
rs16927393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2236274	1.00[EUR][1000 genomes]
rs3794085	1.00[EUR][1000 genomes]
rs3794092	1.00[EUR][1000 genomes]
rs4083482	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7123447	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7926298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
2	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:35354000-35359800	Weak transcription	Pancreas	Pancrea
4	chr11:35354000-35367800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:35354400-35366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:35354600-35361600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:35354600-35366000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35354800-35363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr11:35357000-35364000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:35357600-35360000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:35357800-35362000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:35357800-35362400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:35357800-35362800	Enhancers	NHDF-Ad	bronchial
14	chr11:35358000-35359800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:35358000-35360000	Enhancers	Osteobl	bone
16	chr11:35358000-35360800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:35358000-35361000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:35358000-35361000	Enhancers	NH-A	brain
19	chr11:35358000-35362600	Enhancers	NHLF	lung
20	chr11:35358200-35359800	Enhancers	Placenta	Placenta
21	chr11:35358200-35359800	Enhancers	A549	lung
22	chr11:35358200-35360600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:35358400-35361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:35358600-35361400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:35358800-35360000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:35359000-35360000	Enhancers	K562	blood
27	chr11:35359000-35360600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:35359000-35361000	Weak transcription	Brain Anterior Caudate	brain
29	chr11:35359200-35364600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:35359400-35360000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:35359400-35361000	Enhancers	NHEK	skin
32	chr11:35359400-35361200	Enhancers	Hela-S3	cervix
33	chr11:35359400-35361200	Enhancers	HMEC	breast
34	chr11:35359400-35361800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:35359400-35363400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:35359400-35364000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:35359600-35360000	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:35359600-35360000	Weak transcription	HepG2	liver
39	chr11:35359600-35362800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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