Variant report
| Variant | rs12318366 |
|---|---|
| Chromosome Location | chr12:86784758-86784759 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:86783284..86785651-chr14:104583194..104586028,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000207568 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10160933 | 1.00[YRI][hapmap] |
| rs11103901 | 1.00[YRI][hapmap] |
| rs11103902 | 1.00[YRI][hapmap] |
| rs11103910 | 1.00[YRI][hapmap] |
| rs11103922 | 0.87[YRI][hapmap] |
| rs11103937 | 1.00[YRI][hapmap] |
| rs11103956 | 1.00[YRI][hapmap] |
| rs11103959 | 0.88[YRI][hapmap] |
| rs11103986 | 0.88[YRI][hapmap] |
| rs12296316 | 0.88[YRI][hapmap] |
| rs12299950 | 1.00[YRI][hapmap] |
| rs12304625 | 1.00[YRI][hapmap] |
| rs12305480 | 1.00[YRI][hapmap] |
| rs12306070 | 1.00[YRI][hapmap] |
| rs12306726 | 1.00[YRI][hapmap] |
| rs12308711 | 1.00[YRI][hapmap] |
| rs12311208 | 1.00[YRI][hapmap] |
| rs12311647 | 1.00[YRI][hapmap] |
| rs12314245 | 0.83[AFR][1000 genomes] |
| rs12316403 | 0.83[AFR][1000 genomes] |
| rs12316480 | 1.00[YRI][hapmap] |
| rs12318124 | 1.00[YRI][hapmap] |
| rs12318998 | 1.00[YRI][hapmap] |
| rs12319070 | 0.88[YRI][hapmap] |
| rs12321412 | 1.00[YRI][hapmap] |
| rs12321594 | 1.00[YRI][hapmap] |
| rs4842468 | 1.00[YRI][hapmap] |
| rs9971936 | 0.87[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037003 | chr12:86610040-86798121 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2754127 | chr12:86723232-87576932 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
