Variant report

Variant	rs9971936
Chromosome Location	chr12:86794579-86794580
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10160933	0.85[YRI][hapmap]
rs11103901	0.87[YRI][hapmap]
rs11103902	0.87[YRI][hapmap]
rs11103910	0.87[YRI][hapmap]
rs11103922	1.00[YRI][hapmap]
rs11103937	0.87[YRI][hapmap]
rs11103956	0.82[YRI][hapmap]
rs11103959	1.00[YRI][hapmap]
rs11103986	1.00[YRI][hapmap]
rs12296316	1.00[YRI][hapmap]
rs12299950	0.86[YRI][hapmap]
rs12304625	0.87[YRI][hapmap]
rs12305480	0.87[YRI][hapmap]
rs12306070	0.87[YRI][hapmap]
rs12306726	0.82[YRI][hapmap]
rs12308711	0.87[YRI][hapmap]
rs12311208	0.87[YRI][hapmap]
rs12311647	0.87[YRI][hapmap]
rs12314245	0.83[AFR][1000 genomes]
rs12316403	0.83[AFR][1000 genomes]
rs12316480	0.85[YRI][hapmap]
rs12318124	0.87[YRI][hapmap]
rs12318366	0.87[YRI][hapmap];1.00[AFR][1000 genomes]
rs12318998	1.00[YRI][hapmap]
rs12319070	1.00[YRI][hapmap]
rs12321412	0.87[YRI][hapmap]
rs12321594	1.00[YRI][hapmap]
rs4842468	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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