Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12330401	0.88[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28670754	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34908778	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35917295	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56000398	0.82[AMR][1000 genomes]
rs56811290	0.95[ASN][1000 genomes]
rs56836738	0.89[ASN][1000 genomes]
rs58487502	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60469462	0.90[ASN][1000 genomes]
rs60683789	0.88[ASN][1000 genomes]
rs61623796	0.95[ASN][1000 genomes]
rs62284909	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62284913	0.85[ASN][1000 genomes]
rs62284916	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62284918	0.95[ASN][1000 genomes]
rs62284919	0.95[ASN][1000 genomes]
rs62284920	0.95[ASN][1000 genomes]
rs7644218	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9822881	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9836680	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9837458	0.82[AMR][1000 genomes]
rs9848466	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9866512	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv521239	chr3:155755327-155762725	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv965225	chr3:155758196-155767076	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12330366	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155758000-155764800	Weak transcription	Right Atrium	heart
2	chr3:155762200-155763400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:155762400-155763600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:155762600-155769400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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