Variant report
| Variant | rs62284919 |
|---|---|
| Chromosome Location | chr3:155767522-155767523 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:155766964..155770494-chr3:155772877..155775974,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ALG1L15P | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12330366 | 0.95[ASN][1000 genomes] |
| rs12330401 | 0.81[ASN][1000 genomes] |
| rs13062621 | 0.83[ASN][1000 genomes] |
| rs34908778 | 0.81[ASN][1000 genomes] |
| rs34921805 | 0.83[ASN][1000 genomes] |
| rs35639351 | 0.83[ASN][1000 genomes] |
| rs35917295 | 0.81[ASN][1000 genomes] |
| rs55741352 | 0.94[EUR][1000 genomes] |
| rs56811290 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56836738 | 0.94[ASN][1000 genomes] |
| rs57972060 | 0.87[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs60469462 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60683789 | 0.92[ASN][1000 genomes] |
| rs61366297 | 0.82[ASN][1000 genomes] |
| rs61623796 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62284909 | 0.81[ASN][1000 genomes] |
| rs62284913 | 0.89[ASN][1000 genomes] |
| rs62284916 | 0.98[ASN][1000 genomes] |
| rs62284918 | 1.00[ASN][1000 genomes] |
| rs62284920 | 1.00[ASN][1000 genomes] |
| rs73873474 | 0.94[EUR][1000 genomes] |
| rs73873480 | 0.94[EUR][1000 genomes] |
| rs9822881 | 0.81[ASN][1000 genomes] |
| rs9836680 | 0.92[ASN][1000 genomes] |
| rs9848466 | 0.91[ASN][1000 genomes] |
| rs9866512 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592084 | chr3:155751484-155830578 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155762600-155769400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
