Variant report
| Variant | rs9836680 |
|---|---|
| Chromosome Location | chr3:155760232-155760233 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12330366 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12330401 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13062621 | 0.88[ASN][1000 genomes] |
| rs28670754 | 0.82[AMR][1000 genomes] |
| rs34908778 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34921805 | 0.88[ASN][1000 genomes] |
| rs35639351 | 0.88[ASN][1000 genomes] |
| rs35917295 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56000398 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56811290 | 0.92[ASN][1000 genomes] |
| rs56836738 | 0.98[ASN][1000 genomes] |
| rs58487502 | 0.82[AMR][1000 genomes] |
| rs60469462 | 0.88[ASN][1000 genomes] |
| rs60683789 | 0.97[ASN][1000 genomes] |
| rs61623796 | 0.92[ASN][1000 genomes] |
| rs62284909 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62284913 | 0.94[ASN][1000 genomes] |
| rs62284916 | 0.94[ASN][1000 genomes] |
| rs62284918 | 0.92[ASN][1000 genomes] |
| rs62284919 | 0.92[ASN][1000 genomes] |
| rs62284920 | 0.92[ASN][1000 genomes] |
| rs7644218 | 0.82[AMR][1000 genomes] |
| rs9822881 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9837458 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs9848466 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9850516 | 0.91[EUR][1000 genomes] |
| rs9866512 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592084 | chr3:155751484-155830578 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv521239 | chr3:155755327-155762725 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv965225 | chr3:155758196-155767076 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155758000-155764800 | Weak transcription | Right Atrium | heart |
| 2 | chr3:155759800-155761000 | Enhancers | HepG2 | liver |
