Variant report

Variant	rs60469462
Chromosome Location	chr3:155764418-155764419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12330366	0.90[ASN][1000 genomes]
rs55741352	0.88[EUR][1000 genomes]
rs56811290	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56836738	0.89[ASN][1000 genomes]
rs57972060	0.88[EUR][1000 genomes]
rs60683789	0.87[ASN][1000 genomes]
rs61623796	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62284913	0.85[ASN][1000 genomes]
rs62284916	0.93[ASN][1000 genomes]
rs62284918	0.95[ASN][1000 genomes]
rs62284919	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62284920	0.95[ASN][1000 genomes]
rs73873474	0.88[EUR][1000 genomes]
rs73873480	0.88[EUR][1000 genomes]
rs9836680	0.88[ASN][1000 genomes]
rs9848466	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv965225	chr3:155758196-155767076	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155758000-155764800	Weak transcription	Right Atrium	heart
2	chr3:155762600-155769400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links