Variant report

Variant	rs60683789
Chromosome Location	chr3:155756334-155756335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12330366	0.88[ASN][1000 genomes]
rs12330401	0.89[ASN][1000 genomes]
rs13062621	0.91[ASN][1000 genomes]
rs34908778	0.89[ASN][1000 genomes]
rs34921805	0.91[ASN][1000 genomes]
rs35639351	0.91[ASN][1000 genomes]
rs35917295	0.89[ASN][1000 genomes]
rs56000398	0.88[ASN][1000 genomes]
rs56811290	0.92[ASN][1000 genomes]
rs56836738	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60469462	0.87[ASN][1000 genomes]
rs61623796	0.92[ASN][1000 genomes]
rs62284909	0.89[ASN][1000 genomes]
rs62284913	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62284916	0.91[ASN][1000 genomes]
rs62284918	0.92[ASN][1000 genomes]
rs62284919	0.92[ASN][1000 genomes]
rs62284920	0.92[ASN][1000 genomes]
rs9822881	0.89[ASN][1000 genomes]
rs9836680	0.97[ASN][1000 genomes]
rs9848466	0.98[ASN][1000 genomes]
rs9866512	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv521239	chr3:155755327-155762725	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155754200-155758200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:155754800-155758000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:155754800-155758000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:155755200-155756800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:155755600-155756800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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