Variant report

Variant	rs62284920
Chromosome Location	chr3:155768904-155768905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12330366	0.95[ASN][1000 genomes]
rs12330401	0.81[ASN][1000 genomes]
rs13062621	0.83[ASN][1000 genomes]
rs34908778	0.81[ASN][1000 genomes]
rs34921805	0.83[ASN][1000 genomes]
rs35639351	0.83[ASN][1000 genomes]
rs35917295	0.81[ASN][1000 genomes]
rs56811290	1.00[ASN][1000 genomes]
rs56836738	0.94[ASN][1000 genomes]
rs60469462	0.95[ASN][1000 genomes]
rs60683789	0.92[ASN][1000 genomes]
rs61366297	0.82[ASN][1000 genomes]
rs61623796	1.00[ASN][1000 genomes]
rs62284909	0.81[ASN][1000 genomes]
rs62284913	0.89[ASN][1000 genomes]
rs62284916	0.98[ASN][1000 genomes]
rs62284918	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62284919	1.00[ASN][1000 genomes]
rs9822881	0.81[ASN][1000 genomes]
rs9836680	0.92[ASN][1000 genomes]
rs9848466	0.91[ASN][1000 genomes]
rs9866512	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155762600-155769400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155768600-155769200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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