Variant report

Variant	rs12331903
Chromosome Location	chr4:62162139-62162140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10010876	0.83[ASN][1000 genomes]
rs10018853	0.86[JPT][hapmap]
rs10033220	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12505585	0.83[ASN][1000 genomes]
rs12505990	0.82[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs12508911	0.95[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12511914	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1505664	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1505682	0.82[JPT][hapmap]
rs1505685	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17219732	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4860406	0.81[JPT][hapmap]
rs974538	0.86[JPT][hapmap]
rs9998310	0.84[ASW][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:62160600-62162400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:62160800-62162200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:62160800-62162400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:62160800-62164000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:62160800-62167000	Weak transcription	Fetal Lung	lung
14	chr4:62161400-62162200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:62161400-62162200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:62161400-62162400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:62161600-62162400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:62161600-62162400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:62161600-62162400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:62161600-62162400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:62161800-62162200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:62161800-62162200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:62162000-62164000	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:62162000-62167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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