Variant report

Variant	rs1505682
Chromosome Location	chr4:62111856-62111857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10018853	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10033220	0.84[JPT][hapmap]
rs11723103	0.90[ASN][1000 genomes]
rs11731649	0.90[ASN][1000 genomes]
rs12331903	0.82[JPT][hapmap]
rs12505990	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12508911	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs12511914	0.86[JPT][hapmap]
rs13123859	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13127903	0.90[ASN][1000 genomes]
rs13140257	0.88[ASN][1000 genomes]
rs1505664	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1505685	0.81[JPT][hapmap]
rs1551049	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17219732	0.86[JPT][hapmap]
rs2342455	0.89[ASN][1000 genomes]
rs2342486	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28634991	0.84[ASN][1000 genomes]
rs972616	0.90[ASN][1000 genomes]
rs974538	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9998310	0.82[CHD][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62105400-62112600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:62110400-62112000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62110400-62112200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:62110600-62112000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:62110600-62112000	Enhancers	Brain Germinal Matrix	brain
6	chr4:62110600-62112000	Enhancers	Fetal Stomach	stomach
7	chr4:62110600-62112200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:62110600-62112200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:62110800-62112000	Enhancers	Fetal Muscle Leg	muscle
10	chr4:62110800-62112200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:62111000-62112200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:62111000-62113800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:62111200-62112200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:62111200-62112200	Enhancers	Fetal Brain Male	brain
15	chr4:62111400-62112000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:62111400-62112200	Enhancers	Brain Angular Gyrus	brain
17	chr4:62111400-62112200	Enhancers	Brain Anterior Caudate	brain
18	chr4:62111400-62112200	Enhancers	Brain Hippocampus Middle	brain
19	chr4:62111400-62112400	Enhancers	Brain Substantia Nigra	brain
20	chr4:62111400-62114000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:62111400-62120000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:62111600-62112200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:62111800-62112000	Enhancers	Fetal Lung	lung
25	chr4:62111800-62112200	Enhancers	Brain Cingulate Gyrus	brain
26	chr4:62111800-62112200	Active TSS	Brain Inferior Temporal Lobe	brain

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