Variant report

Variant	rs2342486
Chromosome Location	chr4:62118036-62118037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10018853	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723103	0.94[ASN][1000 genomes]
rs11731649	0.94[ASN][1000 genomes]
rs12505990	0.82[ASN][1000 genomes]
rs13123859	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13127903	0.94[ASN][1000 genomes]
rs13140257	0.92[ASN][1000 genomes]
rs1505664	0.92[ASN][1000 genomes]
rs1505682	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1551049	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2342455	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28634991	0.90[ASN][1000 genomes]
rs35289145	0.82[ASN][1000 genomes]
rs950867	0.82[ASN][1000 genomes]
rs972616	0.97[ASN][1000 genomes]
rs974538	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62120000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62112000-62120800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62112200-62118400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62112200-62124000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:62112800-62119200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:62115200-62118600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:62115200-62119000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:62115400-62118600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:62115800-62118800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:62116000-62119600	Weak transcription	Brain Substantia Nigra	brain
12	chr4:62116000-62127000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:62116400-62121400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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