Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10010876	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10018853	0.87[ASN][1000 genomes]
rs10033220	0.87[ASN][1000 genomes]
rs11723103	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11731649	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12505585	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12505990	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508911	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12511914	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13123859	0.87[ASN][1000 genomes]
rs13127903	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13140257	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1505664	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1505682	0.84[ASN][1000 genomes]
rs1505685	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1551049	0.82[ASN][1000 genomes]
rs2342455	0.93[ASN][1000 genomes]
rs2342486	0.90[ASN][1000 genomes]
rs35289145	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4860406	0.84[ASN][1000 genomes]
rs67050759	0.83[ASN][1000 genomes]
rs950867	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs972616	0.93[ASN][1000 genomes]
rs974538	0.91[ASN][1000 genomes]
rs9998310	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62135000-62138400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:62135000-62138600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:62135800-62140400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:62136600-62138600	Enhancers	Brain Substantia Nigra	brain
9	chr4:62136600-62138800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:62136800-62138400	Weak transcription	Fetal Lung	lung
11	chr4:62137000-62139000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:62137400-62139200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:62137600-62138600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:62137600-62138800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:62137600-62139000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:62137800-62138200	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:62137800-62138600	Weak transcription	Brain Angular Gyrus	brain

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