Variant report

Variant	rs12505585
Chromosome Location	chr4:62157435-62157436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10010876	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033220	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723103	0.82[ASN][1000 genomes]
rs11731649	0.82[ASN][1000 genomes]
rs12331903	0.83[ASN][1000 genomes]
rs12505990	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12508911	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12511914	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127903	0.82[ASN][1000 genomes]
rs1505685	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17219732	0.87[ASN][1000 genomes]
rs2342455	0.81[ASN][1000 genomes]
rs28634991	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35289145	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4860406	0.84[ASN][1000 genomes]
rs67050759	0.83[ASN][1000 genomes]
rs950867	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972616	0.81[ASN][1000 genomes]
rs9998310	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62151400-62158600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62156600-62161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62157400-62158600	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links