Variant report

Variant	rs9998310
Chromosome Location	chr4:62159915-62159916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10010876	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10018853	0.84[CHD][hapmap];0.90[JPT][hapmap]
rs10033220	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11723103	0.81[ASN][1000 genomes]
rs11731649	0.81[ASN][1000 genomes]
rs12331903	0.84[ASW][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12505585	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12505990	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13127903	0.81[ASN][1000 genomes]
rs1505664	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs1505682	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1505685	0.96[CEU][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17219732	1.00[ASW][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2342455	0.81[ASN][1000 genomes]
rs28634991	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35289145	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4860406	0.89[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs67050759	0.82[ASN][1000 genomes]
rs950867	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs974538	0.81[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62156600-62161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:62158600-62160000	Enhancers	Brain Angular Gyrus	brain
4	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:62158800-62161400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:62158800-62161400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:62158800-62161600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:62159000-62160600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:62159000-62161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:62159600-62160000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:62159600-62160800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:62159800-62160000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:62159800-62160800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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