Variant report

Variant	rs12511914
Chromosome Location	chr4:62154029-62154030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10010876	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018853	0.90[JPT][hapmap]
rs10033220	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723103	0.82[ASN][1000 genomes]
rs11731649	0.82[ASN][1000 genomes]
rs12331903	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12505585	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505990	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12508911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13127903	0.82[ASN][1000 genomes]
rs1505664	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1505682	0.86[JPT][hapmap]
rs1505685	0.96[CEU][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17219732	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2342455	0.81[ASN][1000 genomes]
rs28634991	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35289145	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4860406	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs67050759	0.83[ASN][1000 genomes]
rs950867	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972616	0.81[ASN][1000 genomes]
rs974538	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9998310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62151400-62154600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:62151400-62158600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain

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