Variant report

Variant	rs4860406
Chromosome Location	chr4:62136915-62136916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10010876	0.84[ASN][1000 genomes]
rs10018853	0.81[JPT][hapmap]
rs10033220	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12331903	0.81[JPT][hapmap]
rs12505585	0.84[ASN][1000 genomes]
rs12505990	0.87[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs12508911	0.89[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12511914	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1505668	0.82[ASN][1000 genomes]
rs1505670	0.80[ASN][1000 genomes]
rs1505685	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17219732	0.86[JPT][hapmap]
rs28634991	0.84[ASN][1000 genomes]
rs35289145	0.88[ASN][1000 genomes]
rs67050759	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs950867	0.88[ASN][1000 genomes]
rs9998310	0.89[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62134200-62137200	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:62134200-62138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:62135000-62137000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:62135000-62138400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:62135000-62138600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:62135400-62137000	Weak transcription	Brain Angular Gyrus	brain
9	chr4:62135800-62137200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:62135800-62137400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:62135800-62140400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:62136000-62137000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:62136400-62137600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:62136600-62138600	Enhancers	Brain Substantia Nigra	brain
17	chr4:62136600-62138800	Weak transcription	Brain Anterior Caudate	brain
18	chr4:62136800-62137800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:62136800-62138400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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